Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.5e-71 272.7 136 100.0
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.9e-69 265.8 136 97.1
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 93.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 92.6
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 92.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 92.6
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 93.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 92.6
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 92.6
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 92.6
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 93.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.9e-67 258.1 136 92.6
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 3.9e-67 258.1 136 92.6
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 92.6
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 92.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 91.9
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 92.6
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 91.9
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 91.9
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 91.2
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 91.2
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 91.2
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 91.9
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.9e-66 255.8 136 92.6
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.9e-66 255.8 136 91.2
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 91.2
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 4.3e-66 254.6 137 92.0
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 5.6e-66 254.2 136 90.4
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.6e-66 254.2 136 90.4
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 7.3e-66 253.8 136 91.2
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 7.3e-66 253.8 136 89.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 9.5e-66 253.4 136 89.0
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 9.5e-66 253.4 136 90.4
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 89.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 90.4
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 88.2
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 89.0
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 89.7
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 90.4
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.6e-65 251.5 137 92.0
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 90.4
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 88.2
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.4e-64 249.6 136 89.0
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 88.2
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 89.0
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 86.8
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 88.2
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.0
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 85.3
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 87.5
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 3.4e-63 245.0 149 82.6
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 3.4e-63 245.0 136 87.5
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.4e-63 244.6 138 87.7
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 4.4e-63 244.6 138 87.7
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 5.8e-63 244.2 138 87.7
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 7.6e-63 243.8 159 78.6
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 87.5
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.8e-62 241.5 136 85.3
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 6.4e-62 240.7 136 85.3
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 4.1e-61 238.0 137 83.9
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 2.1e-60 235.7 153 77.8
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.7e-60 235.3 137 85.4
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.0e-60 234.2 148 79.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.8e-60 233.8 136 84.6
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.7e-59 232.6 136 80.9
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.0e-59 231.9 136 83.8
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.0e-59 231.9 136 86.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 8.7e-59 230.3 172 68.6
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.3e-58 228.4 169 71.6
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 5.6e-58 227.6 139 81.3
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 9.6e-58 226.9 189 66.1
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.2e-57 226.5 136 77.9
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 3.6e-57 224.9 136 75.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 6.2e-57 224.2 136 75.7
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.7e-52 208.8 120 85.8
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 3.3e-50 201.8 136 75.0
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.4e-48 196.4 105 90.5
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.8e-48 196.1 124 79.0
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.4e-48 195.7 110 84.5
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 5.3e-48 194.5 136 75.7
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.2e-47 193.4 169 63.9
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.5e-47 193.0 108 84.3
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 2.2e-46 189.1 136 72.8
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.9e-46 188.7 105 85.7
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.4e-45 184.5 136 72.1
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 6.0e-44 181.0 138 71.0
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.3e-43 179.9 106 84.0
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 3.3e-42 175.3 136 67.6
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.1e-40 170.2 156 60.3
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 5.8e-39 164.5 136 63.2
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 4.9e-38 161.4 136 62.5
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.2e-37 158.3 80 95.0
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 1.8e-35 152.9 80 92.5
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 3.9e-35 151.8 77 98.7
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 3.9e-35 151.8 77 98.7
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 3.3e-34 148.7 81 90.1
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 3.3e-34 148.7 142 47.2
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 2.1e-33 146.0 82 85.4
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 2.1e-33 146.0 82 85.4
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 2.1e-33 146.0 82 85.4
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 2.8e-33 145.6 77 92.2
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 4.8e-33 144.8 77 90.9
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 6.2e-33 144.4 77 90.9
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 6.2e-33 144.4 77 90.9
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 6.2e-33 144.4 77 90.9
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 6.2e-33 144.4 77 90.9
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.1e-32 143.7 77 90.9
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.4e-32 142.5 77 89.6
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 4.0e-32 141.7 77 89.6
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.0e-32 141.7 77 89.6
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 5.3e-32 141.4 77 89.6
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 5.3e-32 141.4 77 89.6
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.3e-32 141.4 77 89.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 6.9e-32 141.0 133 49.6
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 6.9e-32 141.0 128 50.0
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.2e-31 140.2 77 88.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.2e-31 140.2 80 85.0
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 88.3
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 3.4e-31 138.7 82 81.7
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 85.7
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.8e-31 137.9 82 81.7
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.0e-30 137.1 156 48.1
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 1.3e-30 136.7 87 78.2
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.7e-30 136.3 77 84.4
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.7e-30 136.3 77 84.4
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 2.2e-30 136.0 77 84.4
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 83.1
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.8e-30 135.2 82 79.3
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 8.4e-30 134.0 77 80.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 8.4e-30 134.0 77 81.8
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.4e-29 133.3 76 84.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 4.2e-29 131.7 77 81.8
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 5.5e-29 131.3 75 84.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 8.7e-27 124.0 74 78.4
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.5e-26 123.2 126 53.2
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.5e-26 123.2 60 96.7
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 2.5e-26 122.5 115 61.7
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.3e-25 120.2 60 95.0
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 1.3e-25 120.2 128 55.5
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.1e-24 117.1 56 98.2
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.4e-24 116.7 56 98.2
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.4e-24 116.7 56 98.2
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 4.1e-24 115.2 56 94.6
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 5.3e-24 114.8 56 96.4
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 5.3e-24 114.8 56 96.4
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 2.6e-23 112.5 56 94.6
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 7.6e-23 110.9 56 92.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.6e-20 103.2 57 86.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 2.7e-20 102.4 56 87.5
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 3.6e-20 102.1 75 58.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.4e-19 100.1 56 83.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 7.4e-18 94.4 50 90.0
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.0e-15 86.3 44 88.6
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 3.8e-14 82.0 45 84.4
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 4.7e-12 75.1 126 35.7
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 7.4e-10 67.8 41 80.5
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.8e-08 63.2 135 27.4
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.8e-08 63.2 138 27.5
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 3.4e-07 58.9 29 93.1
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 2.9e-06 55.8 25 96.0


User provided reference genes

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