Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023115.2 Cucumis melo HOM05D002914 ORTHO05D003196 9.1e-47 189.9 95 100.0
CsaV3_4G011800 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.7e-37 159.1 93 90.3
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 3.1e-23 111.7 85 72.9
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 7.5e-17 90.5 99 53.5
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.0e-14 82.4 99 49.5
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.5e-14 81.6 87 52.9
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.7e-13 79.3 90 48.9
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.7e-13 79.3 90 48.9
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.8e-13 78.2 90 48.9
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.8e-13 78.2 79 54.4
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 3.8e-13 78.2 76 55.3
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 6.5e-13 77.4 74 54.1
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.9e-12 75.9 105 46.7
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 1.9e-12 75.9 89 48.3
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 2.5e-12 75.5 90 50.0
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 2.5e-12 75.5 93 46.2
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 3.2e-12 75.1 82 48.8
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 3.2e-12 75.1 86 47.7
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 3.2e-12 75.1 89 48.3
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 4.2e-12 74.7 78 51.3
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 5.5e-12 74.3 78 53.8
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 5.5e-12 74.3 68 57.4
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 7.2e-12 73.9 95 46.3
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 9.5e-12 73.6 63 60.3
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.2e-11 73.2 67 58.2
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.2e-11 73.2 94 46.8
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 1.2e-11 73.2 66 54.5
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 1.2e-11 73.2 66 54.5
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 1.2e-11 73.2 66 54.5
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 1.2e-11 73.2 66 54.5
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 1.6e-11 72.8 92 46.7
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 2.1e-11 72.4 66 56.1
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 2.1e-11 72.4 66 56.1
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 2.1e-11 72.4 84 50.0
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.1e-11 72.4 79 48.1
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.8e-11 72.0 77 53.2
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 3.6e-11 71.6 106 44.3
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.6e-11 71.6 88 46.6
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 3.6e-11 71.6 63 55.6
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 3.6e-11 71.6 73 50.7
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.7e-11 71.2 67 55.2
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 6.1e-11 70.9 80 48.8
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 6.1e-11 70.9 110 44.5
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 8.0e-11 70.5 82 48.8
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 8.0e-11 70.5 83 47.0
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 1.0e-10 70.1 79 48.1
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 1.0e-10 70.1 66 53.0
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 1.0e-10 70.1 77 51.9
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 1.0e-10 70.1 87 44.8
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 1.0e-10 70.1 80 50.0
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.4e-10 69.7 82 45.1
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 1.8e-10 69.3 81 45.7
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 1.8e-10 69.3 73 49.3
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 2.3e-10 68.9 64 54.7
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 2.3e-10 68.9 72 51.4
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.3e-10 68.9 79 51.9
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 2.3e-10 68.9 67 53.7
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 3.0e-10 68.6 69 52.2
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 3.0e-10 68.6 69 52.2
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 3.0e-10 68.6 69 52.2
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 5.2e-10 67.8 99 43.4
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 5.2e-10 67.8 112 39.3
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.5e-09 66.2 78 44.9
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 2.0e-09 65.9 74 51.4
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 2.0e-09 65.9 80 46.2
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 2.0e-09 65.9 78 44.9
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 2.6e-09 65.5 81 43.2
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.4e-09 65.1 78 43.6
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 3.4e-09 65.1 107 40.2
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 3.4e-09 65.1 62 54.8
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.4e-09 64.7 76 46.1
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.7e-09 64.3 78 43.6
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.7e-09 64.3 86 44.2
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 5.7e-09 64.3 78 44.9
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 7.5e-09 63.9 67 46.3
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 9.8e-09 63.5 67 50.7
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 9.8e-09 63.5 70 48.6
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.7e-08 62.8 73 47.9
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 1.7e-08 62.8 66 50.0
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 2.8e-08 62.0 69 47.8
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 2.8e-08 62.0 84 41.7
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 3.7e-08 61.6 69 47.8
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 4.9e-08 61.2 103 40.8
HanXRQChr10g0300121 Helianthus annuus HOM05D002914 ORTHO05D003196 4.9e-08 61.2 74 48.6
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 8.3e-08 60.5 79 45.6
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.1e-07 60.1 85 42.4
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 1.4e-07 59.7 77 42.9
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 1.8e-07 59.3 75 42.7
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.8e-07 59.3 78 42.3
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 3.1e-07 58.5 80 45.0
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 4.1e-07 58.2 74 45.9
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.1e-07 58.2 75 45.3
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 5.4e-07 57.8 74 45.9
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 5.4e-07 57.8 74 45.9
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.4e-07 57.8 103 39.8
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 5.4e-07 57.8 87 36.8
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 7.0e-07 57.4 75 42.7
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 9.2e-07 57.0 74 45.9
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 9.2e-07 57.0 85 38.8
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 9.2e-07 57.0 81 44.4
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 2.0e-06 55.8 62 50.0
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 2.0e-06 55.8 83 38.6
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-06 55.8 87 37.9
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-06 55.8 87 37.9
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.7e-06 55.5 69 44.9
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 3.5e-06 55.1 66 39.4
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 3.5e-06 55.1 73 42.5
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 3.5e-06 55.1 90 37.8
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 4.5e-06 54.7 77 42.9
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.9e-06 54.3 70 42.9
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 5.9e-06 54.3 78 39.7
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 7.8e-06 53.9 118 30.5


User provided reference genes

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