Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 3.6e-158 561.6 300 100.0
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 3.1e-149 531.9 300 90.7
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 5.7e-103 378.3 352 67.3
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 4.0e-56 222.6 269 56.1
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 5.6e-50 202.2 272 44.9
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.0e-48 198.0 284 47.5
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 6.8e-48 195.3 267 46.8
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.5e-47 194.1 208 60.6
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 7.5e-47 191.8 284 46.8
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.7e-46 190.7 286 46.5
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 2.2e-46 190.3 301 43.2
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 3.7e-46 189.5 256 46.9
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 4.9e-46 189.1 220 50.9
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 6.4e-46 188.7 286 47.6
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.4e-46 188.7 303 44.6
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.1e-45 188.0 295 43.7
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.4e-45 186.8 280 45.4
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 4.1e-45 186.0 263 46.8
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 9.2e-45 184.9 283 47.3
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 4.6e-44 182.6 298 42.3
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 6.0e-44 182.2 265 46.0
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.0e-43 181.4 282 45.4
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 1.3e-43 181.0 209 54.1
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.3e-43 180.3 265 44.2
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 3.0e-43 179.9 286 43.7
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 5.0e-43 179.1 263 43.7
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.0e-43 179.1 285 44.9
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.1e-42 177.9 271 45.4
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.9e-42 177.2 281 45.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 7.3e-42 175.3 199 58.3
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.2e-41 174.5 228 53.5
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.6e-41 174.1 199 52.3
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 4.7e-41 172.6 186 57.0
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 4.7e-41 172.6 297 40.4
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 8.1e-41 171.8 215 48.4
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 8.1e-41 171.8 239 46.4
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 1.1e-40 171.4 267 41.2
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 1.4e-40 171.0 281 46.3
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.9e-37 160.6 319 39.8
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.9e-37 160.6 217 45.2
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 3.2e-37 159.8 263 41.4
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 3.2e-37 159.8 282 44.7
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.1e-37 159.5 262 40.5
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.1e-36 157.1 239 43.1
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.1e-36 157.1 205 48.3
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.5e-36 156.4 205 48.8
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 6.0e-36 155.6 204 47.1
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.3e-35 154.5 273 41.4
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.1e-35 152.5 259 37.5
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 5.6e-34 149.1 263 37.6
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.2e-33 147.9 261 39.5
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.6e-33 147.5 210 44.3
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.6e-33 146.4 256 38.7
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 3.6e-33 146.4 243 40.3
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 4.7e-33 146.0 188 50.5
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.8e-32 144.1 257 38.9
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.3e-32 143.7 259 36.7
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.5e-31 141.0 217 41.9
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.5e-31 141.0 217 41.9
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.0e-31 140.6 287 36.9
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.6e-31 140.2 209 46.4
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 7.6e-31 138.7 210 43.8
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.2e-30 137.1 202 47.5
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.2e-30 137.1 290 37.9
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 2.9e-30 136.7 207 42.5
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.8e-30 136.3 264 37.9
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.8e-30 136.3 202 45.0
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 6.4e-30 135.6 241 39.8
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 6.4e-30 135.6 190 46.8
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.4e-29 134.4 228 43.9
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.4e-29 133.7 254 41.7
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 2.4e-29 133.7 191 41.9
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 7.1e-29 132.1 207 42.5
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 9.2e-29 131.7 192 42.7
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 2.7e-28 130.2 258 38.0
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 4.6e-28 129.4 218 41.3
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.0e-28 129.0 228 38.6
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 7.8e-28 128.6 263 41.8
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 7.8e-28 128.6 266 36.8
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 1.7e-27 127.5 297 35.4
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 3.0e-27 126.7 261 35.6
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 5.1e-27 125.9 203 43.3
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 5.1e-27 125.9 268 35.8
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 6.6e-27 125.6 252 38.1
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.5e-26 124.4 255 39.6
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.5e-26 124.4 296 33.4
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.3e-26 123.2 225 38.2
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.3e-26 123.2 225 38.2
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 9.6e-26 121.7 250 36.0
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.6e-25 120.9 263 35.7
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 3.6e-25 119.8 246 35.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 5.2e-24 115.9 190 40.5
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.0e-23 114.0 213 41.8
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.3e-22 111.3 294 33.7
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 3.8e-22 109.8 198 37.9
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.9e-22 109.4 204 40.2
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 6.4e-22 109.0 267 31.5
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.1e-21 108.2 237 34.2
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.4e-21 107.8 225 36.0
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 2.4e-21 107.1 187 40.6
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 3.2e-21 106.7 184 37.5
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.2e-21 106.3 146 45.2
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 7.1e-21 105.5 248 32.3
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 9.3e-21 105.1 235 35.7
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 1.2e-20 104.8 250 35.2
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 2.1e-20 104.0 212 34.4
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 4.6e-20 102.8 218 33.5
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 6.0e-20 102.4 193 38.9
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.0e-19 101.7 202 38.1
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.3e-19 101.3 199 37.2
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.7e-19 100.9 247 33.2
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.7e-19 100.9 198 37.4
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 3.0e-19 100.1 192 37.0
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.9e-19 99.8 277 33.2
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 5.1e-19 99.4 156 42.9
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 6.6e-19 99.0 187 38.5
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 8.7e-19 98.6 207 42.5
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.9e-18 97.4 310 32.3
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 2.5e-18 97.1 209 34.9
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.5e-18 97.1 198 36.4
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.3e-18 96.7 165 41.8
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 4.3e-18 96.3 269 34.9
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 9.6e-18 95.1 165 40.6
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 9.6e-18 95.1 180 40.6
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 1.3e-17 94.7 114 49.1
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 2.1e-17 94.0 199 36.2
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.8e-17 92.8 178 38.8
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 8.1e-17 92.0 242 32.2
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 1.4e-16 91.3 284 32.7
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 6.9e-16 89.0 247 32.0
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.5e-15 87.8 190 37.4
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 2.0e-15 87.4 197 35.5
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 2.0e-15 87.4 197 35.5
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 2.0e-15 87.4 65 67.7
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 3.4e-15 86.7 194 36.1
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 4.5e-15 86.3 158 38.0
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 7.6e-15 85.5 244 31.6
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 1.3e-14 84.7 164 42.1
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 3.8e-14 83.2 193 33.7
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 8.4e-14 82.0 196 34.7
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.1e-13 81.6 173 35.3
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 4.2e-13 79.7 271 32.1
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 4.2e-13 79.7 226 31.0
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.2e-13 79.7 228 32.9
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.6e-12 77.8 271 31.7
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 3.5e-12 76.6 133 34.6
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 6.0e-12 75.9 184 37.5
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 7.9e-12 75.5 208 32.2
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 1.8e-11 74.3 285 29.8
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.0e-11 73.6 147 36.1
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 3.9e-11 73.2 192 31.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.5e-10 71.2 189 31.2
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 9.6e-10 68.6 118 37.3
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 9.6e-10 68.6 267 27.0
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 1.6e-09 67.8 153 43.1
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 8.1e-09 65.5 239 30.5


User provided reference genes

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