Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023070.2 Cucumis melo HOM05D006167 ORTHO05D007635 1.5e-26 122.1 63 100.0
CsaV3_2G012210 Cucumis sativus L. HOM05D006167 ORTHO05D007635 2.0e-26 121.7 63 98.4
ClCG06G007470 Citrullus lanatus HOM05D006167 ORTHO05D007635 1.7e-25 118.6 63 95.2
Sed0006558 Sechium edule HOM05D006167 ORTHO05D007635 1.2e-23 112.5 63 88.9
CiPaw.01G175200 Carya illinoinensis HOM05D006167 ORTHO05D007635 2.5e-21 104.8 63 81.0
Eucgr.H02882 Eucalyptus grandis HOM05D006167 ORTHO05D007635 1.6e-20 102.1 64 78.1
Atru.chr4.1872 Acer truncatum HOM05D006167 ORTHO05D007635 2.1e-20 101.7 63 79.4
PGR004G2513 Punica granatum HOM05D006167 ORTHO05D007635 6.3e-20 100.1 63 76.2
Cpa.g.sc59.38 Carica papaya HOM05D006167 ORTHO05D007635 1.4e-19 99.0 63 74.6
Cfa014825 Carpinus fangiana HOM05D006167 ORTHO05D007635 3.1e-19 97.8 59 78.0
Potri.008G174000 Populus trichocarpa HOM05D006167 ORTHO05D007635 6.9e-19 96.7 63 74.6
Potri.010G063100 Populus trichocarpa HOM05D006167 ORTHO05D007635 6.9e-19 96.7 63 76.2
Nn1g03031 Nelumbo nucifera HOM05D006167 ORTHO05D007635 4.5e-18 94.0 63 66.7
CSS0017011 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 5.9e-18 93.6 63 69.8
CSS0046609 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 5.9e-18 93.6 63 69.8
Lj4g0015547 Lotus japonicus HOM05D006167 ORTHO05D007635 2.2e-17 91.7 60 76.7
Prupe.1G052700 Prunus persica HOM05D006167 ORTHO05D007635 3.8e-17 90.9 63 71.4
THA.LOC109117012 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 3.8e-17 90.9 63 68.3
Glyma.20G081600 Glycine max HOM05D006167 ORTHO05D007635 5.0e-17 90.5 63 73.0
EL10Ac3g06721 Beta vulgaris HOM05D006167 ORTHO05D007635 6.5e-17 90.1 64 68.8
THA.LOC109116489 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 8.5e-17 89.7 63 66.7
THA.LOC109116515 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 8.5e-17 89.7 63 66.7
TWI09G0967 Tripterygium wilfordii HOM05D006167 ORTHO05D007635 8.5e-17 89.7 63 65.1
Actinidia32969 Actinidia chinensis HOM05D006167 ORTHO05D007635 1.1e-16 89.4 65 67.7
Hma1.2p1_0112F.1_g054980 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 1.1e-16 89.4 62 64.5
Duzib052G0384 Durio zibethinus HOM05D006167 ORTHO05D007635 1.9e-16 88.6 63 71.4
Duzib052G0895 Durio zibethinus HOM05D006167 ORTHO05D007635 1.9e-16 88.6 63 71.4
Duzib266G0005 Durio zibethinus HOM05D006167 ORTHO05D007635 1.9e-16 88.6 63 71.4
CANSAT54G0143 Cannabis sativa HOM05D006167 ORTHO05D007635 2.5e-16 88.2 58 77.6
Lalb_Chr03g0036881 Lupinus albus HOM05D006167 ORTHO05D007635 3.2e-16 87.8 63 69.8
Thecc.04G269200 Theobroma cacao HOM05D006167 ORTHO05D007635 3.2e-16 87.8 63 71.4
Dinv29784 Davidia involucrata HOM05D006167 ORTHO05D007635 4.2e-16 87.4 63 63.5
TAR362G1146 Trochodendron aralioides HOM05D006167 ORTHO05D007635 4.2e-16 87.4 63 65.1
COL.COLO4_16007 Corchorus olitorius HOM05D006167 ORTHO05D007635 1.2e-15 85.9 59 72.9
CANSAT78G0928 Cannabis sativa HOM05D006167 ORTHO05D007635 2.7e-15 84.7 63 68.3
Cc03_g06850 Coffea canephora HOM05D006167 ORTHO05D007635 3.6e-15 84.3 67 67.2
Oeu012938.1 Olea europaea HOM05D006167 ORTHO05D007635 6.1e-15 83.6 65 66.2
RcHm_v2.0_Chr4g0396111 Rosa chinensis HOM05D006167 ORTHO05D007635 1.3e-14 82.4 61 63.9
Gohir.D02G050200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.8e-14 82.0 63 66.7
HanXRQChr13g0410431 Helianthus annuus HOM05D006167 ORTHO05D007635 2.3e-14 81.6 65 61.5
Lsat_1_v5_gn_1_76160 Lactuca sativa HOM05D006167 ORTHO05D007635 2.3e-14 81.6 61 67.2
Aa31LG9G4150 Aethionema arabicum HOM05D006167 ORTHO05D007635 3.0e-14 81.3 64 60.9
Carub.0007s2902 Capsella rubella HOM05D006167 ORTHO05D007635 3.9e-14 80.9 63 60.3
FAN12G1688 Fragaria x ananassa HOM05D006167 ORTHO05D007635 3.9e-14 80.9 57 64.9
FAN17G0547 Fragaria x ananassa HOM05D006167 ORTHO05D007635 3.9e-14 80.9 57 64.9
Hma1.2p1_0144F.1_g065120 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 3.9e-14 80.9 59 64.4
Gorai.004G118700 Gossypium raimondii HOM05D006167 ORTHO05D007635 5.1e-14 80.5 63 66.7
Hma1.2p1_0432F.1_g151790 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 5.1e-14 80.5 59 62.7
arahy.Tifrunner.gnm1.ann1.C36CE0 Arachis hypogaea HOM05D000254 ORTHO05D000165 8.7e-14 79.7 47 83.0
BcaB04g17822 Brassica carinata HOM05D006167 ORTHO05D007635 8.7e-14 79.7 63 57.1
BcaC07g37498 Brassica carinata HOM05D006167 ORTHO05D007635 8.7e-14 79.7 63 57.1
A08p07960 Brassica napus HOM05D006167 ORTHO05D007635 8.7e-14 79.7 63 57.1
BolC8t47817H Brassica oleracea HOM05D006167 ORTHO05D007635 8.7e-14 79.7 63 57.1
BraA08t32818Z Brassica rapa HOM05D006167 ORTHO05D007635 8.7e-14 79.7 63 57.1
FvH4_4g05200 Fragaria vesca HOM05D006167 ORTHO05D007635 1.1e-13 79.3 57 63.2
Sp7g11110 Schrenkiella parvula HOM05D006167 ORTHO05D007635 1.1e-13 79.3 63 57.1
AL7G43090 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.5e-13 79.0 63 57.1
Nitab4.5_0000867g0070 Nicotiana tabacum HOM05D006167 ORTHO05D007635 1.5e-13 79.0 63 63.5
Thhalv10026745m.g Eutrema salsugineum HOM05D006167 ORTHO05D007635 1.9e-13 78.6 63 58.7
AT4G13520 Arabidopsis thaliana HOM05D006167 ORTHO05D007635 3.3e-13 77.8 63 55.6
SHI00872 Sapria himalayana HOM05D006167 ORTHO05D007635 3.3e-13 77.8 61 60.7
Gohir.D08G110800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.3e-13 77.4 63 63.5
Psat6g109400 Pisum sativum HOM05D006167 ORTHO05D007635 4.3e-13 77.4 58 58.6
CARHR219150 Cardamine hirsuta HOM05D006167 ORTHO05D007635 5.7e-13 77.0 63 57.1
Dinv18834 Davidia involucrata HOM05D006167 ORTHO05D007635 5.7e-13 77.0 63 60.3
Gohir.D04G064600 Gossypium hirsutum HOM05D006167 ORTHO05D007635 7.4e-13 76.6 63 65.1
Gohir.D08G046000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 7.4e-13 76.6 62 64.5
Gorai.008G094700 Gossypium raimondii HOM05D006167 ORTHO05D007635 7.4e-13 76.6 62 64.5
Gorai.007G213200 Gossypium raimondii HOM05D006167 ORTHO05D007635 9.7e-13 76.3 63 63.5
Gohir.D11G199000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.3e-12 75.9 63 61.9
Gorai.012G072500 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.3e-12 75.9 63 65.1
vmacro15491 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 1.3e-12 75.9 59 61.0
vmacro22827 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 1.3e-12 75.9 59 61.0
AL5G12040 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.6e-12 75.5 63 55.6
AL5G12300 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 1.6e-12 75.5 63 55.6
Gohir.D05G314750 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.6e-12 75.5 63 63.5
Gohir.D12G087200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.6e-12 75.5 63 60.3
Gorai.011G155100 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.6e-12 75.5 63 63.5
Gohir.D09G064700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.2e-12 75.1 63 61.9
Ca_00011_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 2.8e-12 74.7 58 58.6
Ca_26216_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 2.8e-12 74.7 58 58.6
Gorai.008G097400 Gossypium raimondii HOM05D006167 ORTHO05D007635 2.8e-12 74.7 63 60.3
Gorai.011G088300 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.7e-12 74.3 63 61.9
Sc19g0005700 Simmondsia chinensis HOM05D006167 ORTHO05D007635 3.7e-12 74.3 64 60.9
Solyc12g097040.1 Solanum lycopersicum HOM05D006167 ORTHO05D007635 3.7e-12 74.3 65 55.4
SalBow3G0251 Salvia bowleyana HOM05D006167 ORTHO05D007635 4.8e-12 73.9 66 62.1
SalBow3G4531 Salvia bowleyana HOM05D006167 ORTHO05D007635 4.8e-12 73.9 66 62.1
Hma1.2p1_0014F.1_g009760 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 6.3e-12 73.6 58 58.6
SalBow5G0916 Salvia bowleyana HOM05D006167 ORTHO05D007635 6.3e-12 73.6 65 61.5
SalBow5G2020 Salvia bowleyana HOM05D006167 ORTHO05D007635 6.3e-12 73.6 65 61.5
Gorai.009G336300 Gossypium raimondii HOM05D006167 ORTHO05D007635 8.2e-12 73.2 63 60.3
DCAR_027359 Daucus carota HOM05D006167 ORTHO05D007635 1.4e-11 72.4 59 64.4
Migut.N00323 Erythranthe guttata HOM05D006167 ORTHO05D007635 1.4e-11 72.4 66 60.6
Gohir.D03G098800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.4e-11 72.4 63 61.9
SalBow5G4407 Salvia bowleyana HOM05D006167 ORTHO05D007635 1.4e-11 72.4 66 60.6
SalBow5G4759 Salvia bowleyana HOM05D006167 ORTHO05D007635 1.4e-11 72.4 66 60.6
Aqoxy5G00097 Aquilegia oxysepala HOM05D006167 ORTHO05D007635 1.8e-11 72.0 63 60.3
AUR62035353 Chenopodium quinoa HOM05D006167 ORTHO05D007635 1.8e-11 72.0 54 66.7
Gorai.005G130300 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.8e-11 72.0 63 61.9
Gohir.D02G123800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.1e-11 70.9 63 60.3
CAN.G566.4 Capsicum annuum HOM05D006167 ORTHO05D007635 5.3e-11 70.5 67 53.7
Gohir.D10G139400 Gossypium hirsutum HOM05D006167 ORTHO05D007635 5.3e-11 70.5 63 60.3
Phvul.007G232600 Phaseolus vulgaris HOM05D006167 ORTHO05D007635 6.9e-11 70.1 58 62.1
TPR.G23974 Trifolium pratense HOM05D006167 ORTHO05D007635 6.9e-11 70.1 58 60.3
ECA248G1405 Erigeron canadensis HOM05D006167 ORTHO05D007635 1.5e-10 68.9 77 49.4
Gorai.003G103700 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.5e-10 68.9 63 58.7
Lsat_1_v5_gn_2_42001 Lactuca sativa HOM05D006167 ORTHO05D007635 1.5e-10 68.9 65 50.8
Rhsim09G0043900 Rhododendron simsii HOM05D006167 ORTHO05D007635 1.5e-10 68.9 51 66.7
Gohir.D01G140700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.0e-10 68.6 63 58.7
Sc13g0003020 Simmondsia chinensis HOM05D006167 ORTHO05D007635 2.6e-10 68.2 65 60.0
unitig_744.g24610 Utricularia gibba HOM05D006167 ORTHO05D007635 4.5e-10 67.4 61 59.0
Atru.chr1.877 Acer truncatum HOM05D006167 ORTHO05D007635 7.7e-10 66.6 48 72.9
Peaxi162Scf01007g00005 Petunia axillaris HOM05D006167 ORTHO05D007635 7.7e-10 66.6 71 47.9
Gohir.D04G080000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.7e-09 65.5 58 60.3
SEGI_07901 Sequoiadendron giganteum HOM05D006167 ORTHO05D007635 8.5e-09 63.2 61 52.5
Gorai.010G122300 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.2e-08 61.2 55 60.0
TAR629G1972 Trochodendron aralioides HOM05D006167 ORTHO05D007635 3.2e-08 61.2 58 51.7
SGA_v2.0_scaffold35G14127 Striga asiatica HOM05D006167 ORTHO05D007635 4.2e-08 60.8 66 51.5
Aa31LG8G10950 Aethionema arabicum HOM05D006167 ORTHO05D007635 1.6e-07 58.9 63 47.6
SGA_v2.0_scaffold189G40388 Striga asiatica HOM05D006167 ORTHO05D007635 2.7e-07 58.2 66 48.5
Mapoly0016s0086 Marchantia polymorpha HOM05D006167 ORTHO05D007635 1.0e-06 56.2 62 50.0
A02p27890 Brassica napus HOM05D016819 ORTHO05D017546 1.4e-06 55.8 48 62.5
BraA02t07827Z Brassica rapa HOM05D016819 ORTHO05D017546 1.4e-06 55.8 48 62.5
HPP92_017313 Vanilla planifolia HOM05D006167 ORTHO05D007635 3.0e-06 54.7 54 57.4
Ah.12g062540 Amaranthus hybridus HOM05D006167 ORTHO05D007635 3.9e-06 54.3 60 51.7
BolC2t10448H Brassica oleracea HOM05D016819 ORTHO05D017546 3.9e-06 54.3 51 56.9


User provided reference genes

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