Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 7.8e-176 620.5 358 100.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.6e-163 578.9 355 93.8
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.4e-148 529.3 355 87.6
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 7.4e-134 481.1 353 81.6
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.9e-131 471.5 350 76.0
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.6e-126 456.1 350 74.0
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.8e-125 452.6 350 73.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 2.6e-102 376.3 349 61.9
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.6e-102 376.3 351 62.1
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.3e-101 374.0 352 62.2
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.7e-101 373.6 350 65.1
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 9.1e-100 367.9 347 62.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.2e-99 367.5 349 63.9
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.2e-99 367.5 349 63.9
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 3.8e-98 362.5 351 59.5
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.6e-94 349.7 349 60.2
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 8.3e-93 344.7 350 57.7
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.4e-92 344.0 349 58.5
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 4.1e-92 342.4 357 61.9
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 9.2e-92 341.3 348 60.6
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.7e-90 337.0 338 62.7
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 3.3e-89 332.8 350 63.4
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.6e-88 330.5 349 60.2
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.8e-88 329.7 352 58.5
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 2.8e-88 329.7 352 58.5
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.0e-87 327.8 350 55.1
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.8e-87 327.0 351 57.8
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 8.9e-87 324.7 343 61.2
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.2e-86 324.3 352 60.5
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.2e-86 324.3 352 60.5
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.5e-86 323.9 349 59.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.5e-86 323.9 349 59.3
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.5e-86 323.9 354 59.0
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 5.8e-86 322.0 349 53.0
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 5.8e-86 322.0 352 60.5
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.3e-85 320.9 349 55.9
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 4.9e-85 318.9 352 58.5
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.8e-84 317.0 352 58.5
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 3.2e-84 316.2 352 55.7
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 3.2e-84 316.2 349 58.5
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.0e-84 315.1 352 55.7
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 9.2e-84 314.7 360 53.3
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.6e-83 313.9 351 58.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.0e-82 311.2 353 56.9
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.0e-82 311.2 353 56.7
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.7e-82 310.5 358 55.3
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 3.9e-82 309.3 349 53.3
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 7.3e-81 305.1 350 52.0
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.4e-79 300.8 349 56.7
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.4e-79 300.8 357 53.8
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.2e-78 297.7 350 54.0
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 4.4e-78 295.8 350 54.3
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.8e-78 295.4 349 52.7
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.9e-77 293.1 354 52.8
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.9e-77 293.1 345 55.1
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 6.4e-77 292.0 362 53.0
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.3e-74 284.3 363 54.8
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 1.7e-74 283.9 358 52.0
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.3e-74 283.5 357 52.1
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 8.6e-74 281.6 361 51.2
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 3.3e-73 279.6 356 50.8
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.6e-73 278.9 357 51.5
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.8e-72 276.6 359 51.0
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 3.6e-72 276.2 349 53.9
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 6.2e-72 275.4 358 49.7
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 3.1e-71 273.1 364 50.8
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 5.2e-71 272.3 349 51.3
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.6e-70 270.0 374 49.2
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.6e-70 270.0 350 51.4
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 5.8e-70 268.9 386 47.4
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 9.9e-70 268.1 354 50.6
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 9.9e-70 268.1 354 50.6
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.7e-69 267.3 356 53.1
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.2e-69 266.9 350 50.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 8.3e-69 265.0 360 51.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.1e-68 264.6 343 49.0
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 2.4e-68 263.5 359 49.0
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 2.4e-68 263.5 359 49.0
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 9.2e-68 261.5 353 49.0
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 4.6e-67 259.2 355 49.0
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.3e-66 256.9 341 49.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 3.9e-66 256.1 332 49.1
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 9.5e-65 251.5 375 47.5
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 4.7e-64 249.2 355 45.4
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 8.1e-64 248.4 393 45.5
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.1e-63 246.5 368 46.7
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 8.9e-63 245.0 359 48.2
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 3.4e-62 243.0 320 47.5
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.3e-61 241.1 277 59.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.7e-61 240.7 360 44.7
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.4e-60 237.7 374 47.9
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.0e-58 231.5 350 46.0
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.7e-58 230.7 356 46.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 5.1e-58 229.2 376 47.6
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 6.6e-58 228.8 378 47.1
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 3.1e-55 219.9 358 46.6
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 9.0e-55 218.4 353 45.6
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 3.4e-54 216.5 372 45.4
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 9.9e-54 214.9 352 43.5
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.3e-53 214.5 372 45.7
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 2.2e-53 213.8 334 42.5
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 6.4e-53 212.2 362 44.5
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.4e-52 211.1 347 42.4
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 9.3e-52 208.4 373 44.5
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 7.8e-51 205.3 308 43.5
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.6e-50 202.2 351 41.6
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 9.6e-49 198.4 345 40.6
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.3e-48 198.0 331 45.6
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 2.4e-47 193.7 336 42.0
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 3.1e-47 193.4 368 44.3
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 7.6e-46 188.7 293 50.2
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 2.2e-45 187.2 344 43.3
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 2.9e-45 186.8 348 38.2
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 4.9e-45 186.0 346 42.8
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.8e-42 177.6 313 41.2
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 8.7e-42 175.3 358 38.8
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.5e-41 174.5 338 38.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 4.3e-41 172.9 357 39.5
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 9.0e-39 165.2 208 52.9
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 2.1e-35 154.1 340 35.6
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.9e-34 149.8 276 43.5
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.3e-32 144.8 349 35.5
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.8e-31 141.0 321 38.0
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 6.9e-31 139.0 329 32.5
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 2.0e-30 137.5 380 35.8
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.0e-29 135.2 357 33.9
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.3e-29 134.8 317 33.8
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.4e-28 131.3 351 32.8
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 7.1e-28 129.0 131 57.3
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 9.3e-28 128.6 172 45.3
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 7.9e-27 125.6 309 33.3
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.8e-26 124.4 199 44.2
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.0e-26 123.6 362 32.3
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.2e-22 111.7 106 58.5
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.7e-21 107.8 197 49.2
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 8.5e-21 105.5 171 43.3
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.8e-18 97.8 89 53.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 2.2e-16 90.9 426 26.3
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 5.3e-15 86.3 170 38.8
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.3e-13 81.6 355 29.9
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 8.5e-13 79.0 267 33.0
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.7e-10 69.3 107 43.0
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.5e-09 68.2 140 45.0
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 1.5e-09 68.2 154 34.4
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 6.3e-08 62.8 63 52.4
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 1.4e-07 61.6 177 33.9
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 5.3e-07 59.7 63 50.8


User provided reference genes

Program Settings