Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 8.8e-128 460.3 234 100.0
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.2e-113 413.3 229 92.6
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 5.2e-112 407.9 228 91.7
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 8.9e-112 407.1 228 91.7
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.4e-111 405.2 227 91.6
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.6e-105 386.3 227 85.9
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.6e-105 386.3 227 85.5
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 8.1e-105 384.0 228 83.3
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.1e-104 383.6 227 85.5
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.4e-104 383.3 228 83.3
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 2.3e-104 382.5 227 83.3
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.1e-104 382.1 228 82.9
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.8e-104 380.9 228 82.0
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.2e-103 380.2 228 84.6
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.5e-103 379.8 228 83.8
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.5e-103 379.8 227 83.3
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 2.0e-103 379.4 227 83.3
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.0e-103 379.4 228 82.9
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 5.8e-103 377.9 227 82.4
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 5.8e-103 377.9 228 82.5
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 7.5e-103 377.5 228 83.3
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 9.8e-103 377.1 228 82.0
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 9.8e-103 377.1 223 84.3
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.7e-102 376.3 228 81.1
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.7e-102 376.3 228 81.1
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 6.4e-102 374.4 227 82.8
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 6.4e-102 374.4 231 80.5
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.1e-101 373.6 228 82.5
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.1e-101 373.6 228 82.5
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.1e-101 373.6 228 82.0
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.1e-101 373.6 228 82.9
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.4e-101 373.2 228 80.7
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.9e-101 372.9 228 81.6
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.9e-101 372.9 228 82.5
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.4e-101 372.5 228 82.5
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.4e-101 371.3 228 80.7
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 5.4e-101 371.3 228 81.6
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 7.1e-101 370.9 228 79.4
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 9.2e-101 370.5 228 81.6
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.6e-100 369.8 228 79.8
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.1e-100 369.4 228 81.1
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 2.7e-100 369.0 228 80.7
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 3.5e-100 368.6 228 78.9
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.5e-100 368.6 228 81.1
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.5e-100 368.6 228 78.9
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 3.5e-100 368.6 228 78.5
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 4.6e-100 368.2 228 80.3
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 4.6e-100 368.2 228 80.3
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 7.8e-100 367.5 228 80.3
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 7.8e-100 367.5 228 79.4
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 7.8e-100 367.5 225 81.3
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.3e-99 366.7 228 77.2
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.3e-99 366.7 228 78.9
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.3e-99 366.7 228 80.7
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 1.7e-99 366.3 228 78.5
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 1.7e-99 366.3 228 79.4
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.7e-99 366.3 229 79.9
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.3e-99 365.9 228 81.1
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 2.3e-99 365.9 228 80.3
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.0e-99 365.5 228 78.5
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.9e-99 365.2 228 77.6
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 3.9e-99 365.2 227 80.2
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 6.6e-99 364.4 228 80.3
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 8.6e-99 364.0 228 78.1
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.1e-98 363.6 228 78.1
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.5e-98 362.5 228 77.6
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 2.5e-98 362.5 228 77.6
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 3.3e-98 362.1 228 79.4
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 3.3e-98 362.1 228 79.8
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 9.5e-98 360.5 227 78.4
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 9.5e-98 360.5 227 78.9
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 9.5e-98 360.5 228 77.6
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.2e-97 360.1 240 77.1
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 1.2e-97 360.1 228 78.9
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 1.6e-97 359.8 221 81.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 2.1e-97 359.4 226 77.0
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 3.6e-97 358.6 228 78.1
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 6.2e-97 357.8 228 76.8
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 8.1e-97 357.5 228 78.5
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.8e-96 356.3 221 81.0
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.3e-96 355.9 228 78.5
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 5.2e-96 354.8 228 74.6
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 8.9e-96 354.0 228 75.0
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.0e-95 352.8 221 77.8
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 2.6e-95 352.4 228 74.6
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.6e-95 352.4 228 74.6
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 3.4e-95 352.1 279 67.4
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 3.4e-95 352.1 228 74.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 5.8e-95 351.3 228 74.1
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 5.8e-95 351.3 228 74.1
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.7e-94 349.7 228 74.6
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.9e-94 349.0 260 71.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 3.2e-93 345.5 228 74.6
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.9e-91 338.6 205 80.5
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.1e-88 330.5 228 70.2
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.0e-88 328.6 228 72.4
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 9.9e-87 323.9 274 62.8
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 9.9e-87 323.9 228 68.4
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 2.2e-86 322.8 205 74.1
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 6.4e-86 321.2 202 80.2
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 1.7e-83 313.2 186 82.8
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.0e-83 312.4 228 66.7
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.1e-83 311.6 187 84.0
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 6.6e-83 311.2 227 64.8
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.3e-81 307.0 228 65.4
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.2e-76 290.4 226 67.3
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.3e-73 280.4 166 84.3
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 1.3e-73 280.4 229 66.8
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 9.0e-72 274.2 228 64.5
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 9.0e-72 274.2 228 60.1
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 6.4e-70 268.1 159 84.3
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 6.4e-70 268.1 159 84.3
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 3.2e-69 265.8 228 58.8
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 3.3e-66 255.8 228 64.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 6.9e-64 248.1 218 55.5
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 7.9e-60 234.6 147 77.6
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.9e-58 229.9 212 59.4
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 6.1e-52 208.4 229 43.7
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.2e-37 159.5 129 63.6
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 4.5e-31 139.0 233 37.8
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.3e-26 122.9 228 36.4
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 2.0e-23 113.6 100 59.0
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.9e-21 107.1 240 32.9
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 2.5e-21 106.7 87 60.9
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.8e-19 98.2 81 63.0
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 2.9e-14 83.2 47 78.7
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 1.6e-12 77.4 62 62.9
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 4.0e-11 72.8 61 60.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 2.2e-09 67.0 46 71.7


User provided reference genes

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