Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 2.1e-51 205.7 128 100.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.3e-36 155.2 111 81.1
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 4.1e-34 148.3 130 80.8
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.5e-25 119.8 133 57.9
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 8.2e-19 97.4 129 55.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.7e-16 89.7 131 46.6
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.5e-15 86.7 131 42.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.9e-15 86.3 116 46.6
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.5e-15 85.9 117 48.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 5.5e-15 84.7 121 44.6
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 7.2e-15 84.3 134 47.8
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 9.4e-15 84.0 123 43.9
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 4.7e-14 81.6 122 48.4
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.7e-14 81.6 124 46.8
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 6.1e-14 81.3 122 42.6
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 6.1e-14 81.3 101 49.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.0e-13 80.5 115 47.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.0e-13 80.5 115 47.8
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.0e-13 80.5 123 43.9
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.8e-13 79.7 115 47.0
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.3e-13 79.3 115 45.2
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.0e-13 79.0 131 45.8
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 6.8e-13 77.8 129 47.3
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 6.8e-13 77.8 129 45.0
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 8.8e-13 77.4 133 46.6
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 8.8e-13 77.4 131 47.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 8.8e-13 77.4 121 52.1
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.8e-13 77.4 132 40.2
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.2e-12 77.0 129 53.5
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.5e-12 76.6 124 42.7
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.5e-12 76.6 120 45.0
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.5e-12 76.6 121 52.1
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.5e-12 76.6 121 49.6
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.0e-12 76.3 131 42.7
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.0e-12 76.3 125 44.0
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.0e-12 76.3 129 53.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.6e-12 75.9 115 43.5
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.6e-12 75.9 128 40.6
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 3.4e-12 75.5 139 45.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.4e-12 75.5 120 43.3
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.4e-12 75.5 125 39.2
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 3.4e-12 75.5 121 46.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.4e-12 75.1 131 42.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 4.4e-12 75.1 115 46.1
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.4e-12 75.1 134 54.5
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.4e-12 75.1 134 54.5
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.4e-12 75.1 126 42.9
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 4.4e-12 75.1 127 44.1
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.7e-12 74.7 134 38.8
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.7e-12 74.7 116 44.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 7.5e-12 74.3 128 44.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 7.5e-12 74.3 112 43.8
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-11 73.6 129 43.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.3e-11 73.6 129 43.4
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.3e-11 73.6 123 43.1
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-11 73.6 133 42.1
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-11 73.6 129 41.1
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.7e-11 73.2 113 44.2
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 2.2e-11 72.8 126 43.7
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 2.2e-11 72.8 132 41.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.2e-11 72.8 124 41.9
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.8e-11 72.4 118 40.7
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.8e-11 72.4 115 44.3
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.8e-11 72.4 125 41.6
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.7e-11 72.0 117 50.4
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.7e-11 72.0 116 40.5
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.8e-11 71.6 123 43.9
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 4.8e-11 71.6 131 43.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.8e-11 71.6 131 38.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 6.3e-11 71.2 122 38.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.3e-11 71.2 104 43.3
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.3e-11 71.2 124 41.1
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 6.3e-11 71.2 124 41.1
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 8.3e-11 70.9 130 46.9
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.1e-10 70.5 107 43.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.1e-10 70.5 126 41.3
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.1e-10 70.5 128 39.1
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-10 70.1 124 58.1
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.4e-10 70.1 125 42.4
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.8e-10 69.7 129 54.3
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.8e-10 69.7 106 40.6
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.4e-10 69.3 126 50.0
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.4e-10 69.3 132 40.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.1e-10 68.9 116 37.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.1e-10 68.9 110 42.7
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.1e-10 68.9 129 49.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 3.1e-10 68.9 126 39.7
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.4e-10 68.2 123 42.3
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.4e-10 68.2 110 46.4
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 7.0e-10 67.8 105 41.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 7.0e-10 67.8 107 44.9
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 7.0e-10 67.8 107 44.9
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.0e-10 67.8 116 43.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.0e-10 67.8 129 48.1
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.0e-10 67.8 129 48.8
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 7.0e-10 67.8 104 43.3
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.0e-10 67.8 105 41.0
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 9.1e-10 67.4 118 41.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 9.1e-10 67.4 132 40.2
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.2e-09 67.0 108 41.7
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.2e-09 67.0 125 58.4
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.6e-09 66.6 113 46.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.6e-09 66.6 104 44.2
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.6e-09 66.6 128 42.2
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.0e-09 66.2 105 41.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.0e-09 66.2 130 35.4
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.0e-09 66.2 132 40.2
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 2.7e-09 65.9 116 41.4
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.7e-09 65.9 134 40.3
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.5e-09 65.5 118 41.5
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.5e-09 65.5 116 41.4
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.5e-09 65.5 133 45.1
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.5e-09 65.5 116 40.5
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.5e-09 65.1 118 41.5
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.5e-09 65.1 105 40.0
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.5e-09 65.1 129 41.9
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.5e-09 65.1 123 39.8
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 5.9e-09 64.7 111 38.7
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 5.9e-09 64.7 111 38.7
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.9e-09 64.7 111 38.7
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 5.9e-09 64.7 111 38.7
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.9e-09 64.7 116 39.7
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 7.7e-09 64.3 123 38.2
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 7.7e-09 64.3 119 41.2
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.0e-08 63.9 131 39.7
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.3e-08 63.5 121 38.8
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-08 63.5 117 37.6
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-08 63.5 117 37.6
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-08 63.5 128 40.6
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-08 63.5 128 40.6
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-08 63.5 133 39.1
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-08 63.5 133 39.1
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.7e-08 63.2 101 39.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.7e-08 63.2 121 41.3
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.7e-08 63.2 117 56.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.2e-08 62.8 119 41.2
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.9e-08 62.4 129 38.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 2.9e-08 62.4 126 38.1
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 2.9e-08 62.4 121 40.5
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 2.9e-08 62.4 131 38.2
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 3.8e-08 62.0 132 37.1
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.0e-08 61.6 129 37.2
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.0e-08 61.6 133 39.1
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 6.5e-08 61.2 119 40.3
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 6.5e-08 61.2 132 37.1
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 6.5e-08 61.2 111 40.5
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.5e-08 61.2 129 37.2
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 6.5e-08 61.2 104 40.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.5e-08 60.8 130 33.1
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-07 60.5 129 37.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.1e-07 60.5 123 35.8
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-07 60.1 129 37.2
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.9e-07 59.7 121 38.0
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.2e-07 58.9 132 37.1
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 4.2e-07 58.5 132 35.6
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.5e-07 58.2 129 35.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 9.4e-07 57.4 126 41.3
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.1e-06 56.2 134 38.1
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.7e-06 55.8 128 56.2
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 4.7e-06 55.1 120 36.7
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 4.7e-06 55.1 120 36.7
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 6.1e-06 54.7 131 35.1
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 6.1e-06 54.7 131 35.1
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 6.1e-06 54.7 131 35.1
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.1e-06 54.7 129 45.7
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 6.1e-06 54.7 111 37.8


User provided reference genes

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