Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022965.2 Cucumis melo HOM05D007512 ORTHO05D009524 5.5e-110 401.0 203 100.0
CsaV3_4G032050 Cucumis sativus L. HOM05D007512 ORTHO05D009524 5.4e-105 384.4 203 95.1
ClCG11G016580 Citrullus lanatus HOM05D007512 ORTHO05D009524 2.8e-98 362.1 203 89.2
Sed0022455 Sechium edule HOM05D007512 ORTHO05D009524 3.9e-87 325.1 201 80.6
Haze_01852 Corylus avellana HOM05D007512 ORTHO05D009524 2.1e-64 249.6 195 63.6
Cfa005459 Carpinus fangiana HOM05D007512 ORTHO05D009524 1.0e-63 247.3 195 62.6
Sabra02G0045700 Salix brachista HOM05D007512 ORTHO05D009524 5.6e-62 241.5 183 62.8
Potri.002G056400 Populus trichocarpa HOM05D007512 ORTHO05D009524 1.2e-61 240.4 183 62.3
Manes.12G132100 Manihot esculenta HOM05D007512 ORTHO05D009524 4.0e-60 235.3 196 59.7
CiPaw.09G218400 Carya illinoinensis HOM05D007512 ORTHO05D009524 5.2e-60 235.0 191 60.2
Cpa.g.sc53.33 Carica papaya HOM05D007512 ORTHO05D009524 6.8e-60 234.6 206 57.8
CSS0030250 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 8.9e-60 234.2 190 61.1
Glyma.02G283200 Glycine max HOM05D007512 ORTHO05D009524 5.8e-59 231.5 180 62.2
VMungo0647G1345 Vigna mungo HOM05D007512 ORTHO05D009524 5.8e-59 231.5 181 62.4
Phvul.008G196000 Phaseolus vulgaris HOM05D007512 ORTHO05D009524 7.6e-59 231.1 184 60.9
GSVIVG01020824001 Vitis vinifera HOM05D007512 ORTHO05D009524 1.3e-58 230.3 184 60.9
CAN.G946.8 Capsicum annuum HOM05D007512 ORTHO05D009524 2.2e-58 229.6 188 59.0
RcHm_v2.0_Chr2g0152451 Rosa chinensis HOM05D007512 ORTHO05D009524 3.8e-58 228.8 181 61.9
Nn7g38060 Nelumbo nucifera HOM05D007512 ORTHO05D009524 4.9e-58 228.4 194 57.7
Nn7g38052 Nelumbo nucifera HOM05D007512 ORTHO05D009524 2.4e-57 226.1 194 57.2
Peaxi162Scf00359g00113 Petunia axillaris HOM05D007512 ORTHO05D009524 3.2e-57 225.7 198 58.6
Ca_06252_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 4.2e-57 225.3 178 61.8
Psat2g017680 Pisum sativum HOM05D007512 ORTHO05D009524 4.2e-57 225.3 180 61.1
TWI14G0908 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 4.2e-57 225.3 201 55.7
Ciclev10032522m.g Citrus clementina HOM05D007512 ORTHO05D009524 7.1e-57 224.6 203 58.1
LjContig00049g0018887 Lotus japonicus HOM05D007512 ORTHO05D009524 1.2e-56 223.8 181 59.7
QL08p045474 Quercus lobata HOM05D007512 ORTHO05D009524 1.6e-56 223.4 188 59.0
FvH4_6g38852 Fragaria vesca HOM05D007512 ORTHO05D009524 2.1e-56 223.0 187 59.9
arahy.Tifrunner.gnm1.ann1.EFEG4J Arachis hypogaea HOM05D007512 ORTHO05D009524 4.6e-56 221.9 189 59.3
Prupe.3G178900 Prunus persica HOM05D007512 ORTHO05D009524 4.6e-56 221.9 193 59.1
Solyc07g044970.1 Solanum lycopersicum HOM05D007512 ORTHO05D009524 7.8e-56 221.1 183 61.2
Rhsim12G0013200 Rhododendron simsii HOM05D007512 ORTHO05D009524 1.3e-55 220.3 191 57.6
Gohir.A11G061700 Gossypium hirsutum HOM05D007512 ORTHO05D009524 3.0e-55 219.2 196 56.1
Medtr5g090740 Medicago truncatula HOM05D007512 ORTHO05D009524 5.1e-55 218.4 178 59.6
PGSC0003DMG400045865 Solanum tuberosum HOM05D007512 ORTHO05D009524 5.1e-55 218.4 189 58.7
PGSC0003DMG402000923 Solanum tuberosum HOM05D007512 ORTHO05D009524 5.1e-55 218.4 189 58.7
TAR626G1484 Trochodendron aralioides HOM05D007512 ORTHO05D009524 6.6e-55 218.0 192 56.8
Duzib147G0049 Durio zibethinus HOM05D007512 ORTHO05D009524 8.7e-55 217.6 196 55.1
Gorai.007G071100 Gossypium raimondii HOM05D007512 ORTHO05D009524 8.7e-55 217.6 196 55.6
Sc23g0003420 Simmondsia chinensis HOM05D007512 ORTHO05D009524 8.7e-55 217.6 186 60.2
Sopen07g023500 Solanum pennellii HOM05D007512 ORTHO05D009524 1.9e-54 216.5 189 58.7
Thecc.01G167000 Theobroma cacao HOM05D007512 ORTHO05D009524 1.9e-54 216.5 196 57.1
Gohir.D11G065600 Gossypium hirsutum HOM05D007512 ORTHO05D009524 4.3e-54 215.3 196 55.6
Lj1C588G3 Lonicera japonica HOM05D007512 ORTHO05D009524 4.3e-54 215.3 186 58.6
Lalb_Chr11g0069491 Lupinus albus HOM05D007512 ORTHO05D009524 5.6e-54 214.9 188 56.4
MBI18_g45404_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 1.3e-53 213.8 191 53.9
Eucgr.A02034 Eucalyptus grandis HOM05D007512 ORTHO05D009524 2.1e-53 213.0 176 63.6
Nitab4.5_0001552g0120 Nicotiana tabacum HOM05D007512 ORTHO05D009524 3.6e-53 212.2 187 56.1
Nitab4.5_0007814g0010 Nicotiana tabacum HOM05D007512 ORTHO05D009524 6.2e-53 211.5 183 55.7
Gohir.D11G065833 Gossypium hirsutum HOM05D007512 ORTHO05D009524 8.1e-53 211.1 178 57.9
Migut.J01325 Erythranthe guttata HOM05D007512 ORTHO05D009524 3.1e-52 209.1 187 57.2
TPR.G8778 Trifolium pratense HOM05D007512 ORTHO05D009524 4.0e-52 208.8 177 57.6
Aqoxy1G01494 Aquilegia oxysepala HOM05D007512 ORTHO05D009524 1.2e-51 207.2 189 52.4
AUR62004262 Chenopodium quinoa HOM05D007512 ORTHO05D009524 2.0e-51 206.5 191 56.0
Gohir.A11G061633 Gossypium hirsutum HOM05D007512 ORTHO05D009524 3.4e-51 205.7 196 53.6
ECA246G3016 Erigeron canadensis HOM05D007512 ORTHO05D009524 5.8e-51 204.9 194 52.6
Zm00001eb300410 Zea mays HOM05D007512 ORTHO05D009524 8.4e-50 201.1 188 55.3
COL.COLO4_29884 Corchorus olitorius HOM05D007512 ORTHO05D009524 1.1e-49 200.7 193 54.4
Oeu021245.2 Olea europaea HOM05D007512 ORTHO05D009524 1.9e-49 199.9 183 56.3
unitig_747.g21446 Utricularia gibba HOM05D007512 ORTHO05D009524 5.4e-49 198.4 182 52.2
AUR62042750 Chenopodium quinoa HOM05D007512 ORTHO05D009524 1.6e-48 196.8 178 56.7
CSS0045166 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 4.6e-48 195.3 191 55.5
Dinv27197 Davidia involucrata HOM05D007512 ORTHO05D009524 4.6e-48 195.3 165 60.6
Ah.05g175540 Amaranthus hybridus HOM05D007512 ORTHO05D009524 6.0e-48 194.9 185 55.7
Os07g0160300 Oryza sativa ssp. japonica HOM05D007512 ORTHO05D009524 1.3e-47 193.7 196 52.0
HanXRQChr05g0157121 Helianthus annuus HOM05D007512 ORTHO05D009524 2.3e-47 193.0 195 53.3
HPP92_026664 Vanilla planifolia HOM05D007512 ORTHO05D009524 6.6e-47 191.4 194 51.0
SGA_v2.0_scaffold45G17047 Striga asiatica HOM05D007512 ORTHO05D009524 8.7e-47 191.0 195 53.8
MBI18_g43440_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 5.6e-46 188.3 191 49.7
CAN.G358.11 Capsicum annuum HOM05D007512 ORTHO05D009524 3.6e-45 185.7 198 48.5
ATR0763G176 Amborella trichopoda HOM05D007512 ORTHO05D009524 5.3e-44 181.8 197 47.2
SEGI_32907 Sequoiadendron giganteum HOM05D007512 ORTHO05D009524 5.1e-39 165.2 176 46.6
AagrBONN_evm.TU.Sc2ySwM_368.3309 Anthoceros agrestis HOM05D007512 ORTHO05D009524 3.3e-38 162.5 186 44.1
Mapoly0032s0087 Marchantia polymorpha HOM05D007512 ORTHO05D009524 4.2e-33 145.6 203 39.4
Lsat_1_v5_gn_5_21320 Lactuca sativa HOM05D007512 ORTHO05D009524 3.0e-31 139.4 181 43.1
Nitab4.5_0000241g0240 Nicotiana tabacum HOM05D007512 ORTHO05D009524 5.7e-30 135.2 197 41.6
Actinidia25705 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.6e-27 126.3 192 41.1
Pp3c3_10350 Physcomitrium patens HOM05D007512 ORTHO05D009524 4.5e-27 125.6 265 31.3
SMO367G0698 Selaginella moellendorffii HOM05D007512 ORTHO05D009524 1.0e-26 124.4 212 35.4
Actinidia25706 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.2e-26 123.2 186 42.5
Pp3c26_9780 Physcomitrium patens HOM05D007512 ORTHO05D009524 2.2e-26 123.2 243 31.3
Atru.chr6.2019 Acer truncatum HOM05D007512 ORTHO05D009524 2.5e-25 119.8 86 61.6
Actinidia18710 Actinidia chinensis HOM05D007512 ORTHO05D009524 5.5e-25 118.6 177 39.0
Actinidia24467 Actinidia chinensis HOM05D007512 ORTHO05D009524 5.7e-22 108.6 128 47.7
PGR142G3775 Punica granatum HOM05D007512 ORTHO05D009524 7.4e-22 108.2 190 34.2
Actinidia18709 Actinidia chinensis HOM05D007512 ORTHO05D009524 9.7e-22 107.8 167 37.1
Actinidia24468 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.2e-21 106.7 176 36.9
Actinidia22804 Actinidia chinensis HOM05D007512 ORTHO05D009524 9.0e-20 101.3 175 34.9
CSS0013803 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 1.2e-19 100.9 186 34.9
Actinidia40448 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.0e-18 97.8 194 34.5
TWI36G1125 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 1.0e-18 97.8 182 36.3
Actinidia02493 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.7e-18 97.1 195 34.4
FAN14G4311 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.5e-18 95.1 118 46.6
Actinidia02491 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.4e-17 94.0 195 32.8
Ca_06242_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 2.5e-17 93.2 98 48.0
FvH4_6g38850 Fragaria vesca HOM05D000876 ORTHO05D000285 3.2e-17 92.8 87 56.3
Sabra01G0030800 Salix brachista HOM05D007512 ORTHO05D009524 6.9e-12 75.1 183 32.2
Actinidia09356 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.7e-10 70.5 100 41.0
CSS0000822 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D009524 2.9e-10 69.7 116 36.2
Duzib177G0331 Durio zibethinus HOM05D000125 ORTHO05D020513 1.2e-08 64.3 124 31.5
Sabra09G0120600 Salix brachista HOM05D000125 ORTHO05D020513 2.7e-08 63.2 113 36.3
Actinidia14260 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.3e-07 60.1 75 38.7
COL.COLO4_13576 Corchorus olitorius HOM05D007512 ORTHO05D020513 4.4e-06 55.8 110 32.7


User provided reference genes

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