Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022886.2 Cucumis melo HOM05D000023 ORTHO05D002750 5.9e-61 237.3 114 100.0
QL10p011117 Quercus lobata HOM05D000023 ORTHO05D000014 2.1e-21 105.9 109 49.5
QL02p096245 Quercus lobata HOM05D000023 ORTHO05D000014 2.7e-21 105.5 107 47.7
Sed0008376 Sechium edule HOM05D000023 ORTHO05D000014 6.6e-20 100.9 113 46.0
Hma1.2p1_2277F.1_g318670 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.1e-19 100.1 103 50.5
Hma1.2p1_0490F.1_g164210 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 4.3e-19 98.2 101 48.5
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 9.6e-19 97.1 107 46.7
CSS0049915 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 3.6e-18 95.1 118 40.7
Hma1.2p1_0988F.1_g244690 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.8e-17 92.8 97 48.5
MSTRG.23368 Avicennia marina HOM05D000023 ORTHO05D000014 4.0e-17 91.7 111 42.3
Hund04838 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-17 90.9 113 40.7
Hund13150 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.0e-17 90.5 113 40.7
Hund18264 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.2e-16 90.1 113 40.7
Hund11026 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.6e-16 89.0 113 40.7
Hund04442 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.5e-16 88.2 113 38.9
Hund10515 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.5e-16 88.2 113 39.8
CSS0005925 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.3e-15 86.7 61 60.7
Hund01251 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.3e-15 86.7 114 39.5
Hund05171 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.2e-15 85.9 116 40.5
HanXRQChr07g0186221 Helianthus annuus HOM05D000023 ORTHO05D000014 2.9e-15 85.5 106 42.5
SHI21514 Sapria himalayana HOM05D000023 ORTHO05D000014 2.9e-15 85.5 118 39.0
Hund24696 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.8e-15 85.1 113 39.8
EL10Ac4g08499 Beta vulgaris HOM05D000023 ORTHO05D000014 4.9e-15 84.7 103 37.9
Hund14796 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.9e-15 84.7 113 38.9
Hund24099 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.4e-15 84.3 114 41.2
SHI36418 Sapria himalayana HOM05D000023 ORTHO05D000014 8.4e-15 84.0 122 41.0
Hund31004 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.4e-15 84.0 113 38.9
CSS0017113 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.4e-14 82.4 109 39.4
Hund15093 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-14 82.4 109 38.5
Hund15138 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-14 82.4 111 40.5
CSS0026234 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 3.2e-14 82.0 109 43.1
CSS0016050 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 4.2e-14 81.6 111 44.1
Hund22686 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.2e-14 81.6 110 39.1
Hund00488 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund04194 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund10386 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund14805 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund22984 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund23411 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund23957 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund25526 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund26626 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund31071 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund31325 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.4e-14 81.3 110 39.1
Hund06285 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.1e-14 80.9 110 39.1
Hund14515 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.1e-14 80.9 113 38.1
Hund30522 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.1e-14 80.9 110 39.1
Hund15523 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.3e-14 80.5 104 40.4
Hund22426 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.3e-14 80.5 104 40.4
Hund23015 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.2e-13 80.1 109 39.4
SHI12076 Sapria himalayana HOM05D007023 ORTHO05D008684 1.6e-13 79.7 120 37.5
Hund12079 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.6e-13 79.7 110 38.2
SGA_v2.0_scaffold281G46900 Striga asiatica HOM05D000023 ORTHO05D000014 2.1e-13 79.3 120 35.0
Hund24914 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.7e-13 79.0 110 36.4
SGA_v2.0_scaffold17G08089 Striga asiatica HOM05D000023 ORTHO05D000014 2.7e-13 79.0 120 35.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 3.5e-13 78.6 116 37.1
Hund18176 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.5e-13 78.6 110 38.2
Hund20085 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.5e-13 78.6 110 38.2
Hund13497 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.0e-13 77.8 110 38.2
Hund11626 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.0e-12 77.0 111 36.9
Hund01885 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.3e-12 76.6 113 38.1
Hund04191 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.9e-12 75.1 110 35.5
SGA_v2.0_scaffold327G48774 Striga asiatica HOM05D000023 ORTHO05D000014 5.1e-12 74.7 120 34.2
THA.LOC104820419 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 5.1e-12 74.7 102 38.2
AL7G46890 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 8.7e-12 73.9 103 40.8
SHI03890 Sapria himalayana HOM05D000023 ORTHO05D000014 8.7e-12 73.9 81 42.0
SHI32655 Sapria himalayana HOM05D000023 ORTHO05D024958 1.1e-11 73.6 97 45.4
Hund16692 Selenicereus undatus HOM05D000023 ORTHO05D005162 1.5e-11 73.2 103 38.8
Hund30017 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.5e-11 73.2 103 38.8
EL10Ac8g19642 Beta vulgaris HOM05D000023 ORTHO05D000014 4.3e-11 71.6 101 36.6
Hund05820 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.3e-11 71.6 98 39.8
Nn1g01508 Nelumbo nucifera HOM05D000023 ORTHO05D012305 5.6e-11 71.2 78 48.7
SHI25354 Sapria himalayana HOM05D000023 ORTHO05D000014 7.4e-11 70.9 115 38.3
Hund20764 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.4e-11 70.9 104 37.5
Nitab4.5_0002586g0050 Nicotiana tabacum HOM05D000023 ORTHO05D002750 9.6e-11 70.5 76 43.4
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.3e-10 70.1 53 54.7
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-10 69.7 95 40.0
PSO170G4702 Papaver somniferum HOM05D000023 ORTHO05D000014 4.8e-10 68.2 114 33.3
SHI05602 Sapria himalayana HOM05D000023 ORTHO05D000014 4.8e-10 68.2 120 33.3
SHI26731 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-09 67.0 86 37.2
Hund08544 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.8e-09 66.2 100 37.0
SHI00692 Sapria himalayana HOM05D000023 ORTHO05D000014 4.0e-09 65.1 114 38.6
BcaB08g36197 Brassica carinata HOM05D000023 ORTHO05D000014 5.3e-09 64.7 100 35.0
QL11p007092 Quercus lobata HOM05D000412 ORTHO05D000429 5.3e-09 64.7 49 53.1
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 9.0e-09 63.9 112 37.5
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 9.0e-09 63.9 99 37.4
C02p50440 Brassica napus HOM05D000023 ORTHO05D000014 1.2e-08 63.5 100 37.0
SHI12545 Sapria himalayana HOM05D000023 ORTHO05D000014 1.2e-08 63.5 120 34.2
PGSC0003DMG400044990 Solanum tuberosum HOM05D009083 ORTHO05D010901 1.2e-08 63.5 77 42.9
Glyma.15G205800 Glycine max HOM05D000023 ORTHO05D000014 1.5e-08 63.2 119 34.5
Glyma.20G072800 Glycine max HOM05D000023 ORTHO05D000014 2.0e-08 62.8 120 33.3
Nitab4.5_0000502g0170 Nicotiana tabacum HOM05D000023 ORTHO05D002750 2.0e-08 62.8 48 52.1
Glyma.10G121900 Glycine max HOM05D000023 ORTHO05D000014 2.6e-08 62.4 120 34.2
Glyma.01G121600 Glycine max HOM05D000023 ORTHO05D000014 3.4e-08 62.0 120 33.3
Glyma.02G159600 Glycine max HOM05D000023 ORTHO05D000014 3.4e-08 62.0 120 33.3
Glyma.03G080400 Glycine max HOM05D000023 ORTHO05D000014 3.4e-08 62.0 120 33.3
Glyma.09G104100 Glycine max HOM05D000023 ORTHO05D000014 3.4e-08 62.0 120 33.3
BcaC08g44948 Brassica carinata HOM05D000023 ORTHO05D000014 4.5e-08 61.6 100 37.0
C06p25790 Brassica napus HOM05D000023 ORTHO05D000014 4.5e-08 61.6 100 37.0
BraA09t37417Z Brassica rapa HOM05D000023 ORTHO05D000014 4.5e-08 61.6 100 36.0
Glyma.20G074600 Glycine max HOM05D000023 ORTHO05D000014 4.5e-08 61.6 120 33.3
Lj2g0024203 Lotus japonicus HOM05D000023 ORTHO05D000014 4.5e-08 61.6 102 32.4
Glyma.04G117600 Glycine max HOM05D000023 ORTHO05D000014 5.8e-08 61.2 120 35.0
Lj8P655T9 Lonicera japonica HOM05D000023 ORTHO05D002750 5.8e-08 61.2 103 36.9
Glyma.06G230700 Glycine max HOM05D000023 ORTHO05D000014 7.6e-08 60.8 120 33.3
Glyma.17G215100 Glycine max HOM05D000023 ORTHO05D000014 7.6e-08 60.8 122 32.8
Sopen10g005310 Solanum pennellii HOM05D000023 ORTHO05D000014 7.6e-08 60.8 109 35.8
Atru.chr9.374 Acer truncatum HOM05D000023 ORTHO05D000014 9.9e-08 60.5 109 34.9
A01p38030 Brassica napus HOM05D000023 ORTHO05D000014 9.9e-08 60.5 100 33.0
A05p26100 Brassica napus HOM05D000023 ORTHO05D000014 9.9e-08 60.5 100 33.0
BolC9t53194H Brassica oleracea HOM05D000023 ORTHO05D000014 9.9e-08 60.5 106 33.0
BraA06t27742Z Brassica rapa HOM05D000023 ORTHO05D000014 9.9e-08 60.5 106 33.0
Glyma.13G192700 Glycine max HOM05D000023 ORTHO05D000014 9.9e-08 60.5 120 32.5
SHI12578 Sapria himalayana HOM05D000023 ORTHO05D024958 9.9e-08 60.5 66 43.9
A06p21240 Brassica napus HOM05D000554 ORTHO05D011030 1.3e-07 60.1 100 33.0
BolC3t16229H Brassica oleracea HOM05D000023 ORTHO05D000014 1.3e-07 60.1 98 35.7
BolC9t57982H Brassica oleracea HOM05D000023 ORTHO05D000014 1.3e-07 60.1 100 33.0
Sopen10g007400 Solanum pennellii HOM05D000023 ORTHO05D000014 1.3e-07 60.1 109 34.9
AT1G36095 Arabidopsis thaliana HOM05D000023 ORTHO05D000014 1.7e-07 59.7 51 54.9
BcaC01g00960 Brassica carinata HOM05D000023 ORTHO05D000014 1.7e-07 59.7 100 39.0
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-07 59.7 40 55.0
Sopen01g050040 Solanum pennellii HOM05D000023 ORTHO05D000014 1.7e-07 59.7 109 34.9
A08p11410 Brassica napus HOM05D000023 ORTHO05D000014 2.2e-07 59.3 75 40.0
A09p32160 Brassica napus HOM05D000023 ORTHO05D000014 2.2e-07 59.3 56 46.4
C07p40300 Brassica napus HOM05D000023 ORTHO05D000014 2.2e-07 59.3 100 37.0
BolC2t11123H Brassica oleracea HOM05D000023 ORTHO05D000014 2.2e-07 59.3 75 40.0
BolC6t37741H Brassica oleracea HOM05D000023 ORTHO05D000014 2.2e-07 59.3 75 40.0
BraA09t38762Z Brassica rapa HOM05D000023 ORTHO05D000014 2.2e-07 59.3 56 46.4
Glyma.09G000200 Glycine max HOM05D000023 ORTHO05D000014 2.2e-07 59.3 120 32.5
A07p03820 Brassica napus HOM05D000023 ORTHO05D000014 2.9e-07 58.9 96 35.4
BolC2t12125H Brassica oleracea HOM05D000023 ORTHO05D000014 2.9e-07 58.9 75 40.0
Lj8P661T5 Lonicera japonica HOM05D000023 ORTHO05D002750 2.9e-07 58.9 103 35.9
Glyma.12G152900 Glycine max HOM05D000023 ORTHO05D000014 3.8e-07 58.5 49 49.0
Lj2C491G6 Lonicera japonica HOM05D000023 ORTHO05D002750 3.8e-07 58.5 103 35.9
SHI04574 Sapria himalayana HOM05D000023 ORTHO05D000014 3.8e-07 58.5 77 37.7
Sopen01g010490 Solanum pennellii HOM05D000023 ORTHO05D000014 3.8e-07 58.5 113 32.7
Glyma.04G163700 Glycine max HOM05D000023 ORTHO05D000014 6.4e-07 57.8 120 32.5
Glyma.19G102600 Glycine max HOM05D000023 ORTHO05D000014 6.4e-07 57.8 123 32.5
Lj2P953T31 Lonicera japonica HOM05D000023 ORTHO05D002750 6.4e-07 57.8 103 37.9
Lj4P619T3 Lonicera japonica HOM05D000023 ORTHO05D002750 6.4e-07 57.8 103 37.9
Lj8P561T28 Lonicera japonica HOM05D000023 ORTHO05D002750 6.4e-07 57.8 103 37.9
Nn2g14678 Nelumbo nucifera HOM05D000023 ORTHO05D000014 6.4e-07 57.8 51 47.1
Thhalv10012187m.g Eutrema salsugineum HOM05D026077 ORTHO05D032958 8.4e-07 57.4 103 35.0
Glyma.08G294500 Glycine max HOM05D000023 ORTHO05D000014 8.4e-07 57.4 123 31.7
Lj1P332T15 Lonicera japonica HOM05D000023 ORTHO05D000014 8.4e-07 57.4 103 35.9
Lj9P526T21 Lonicera japonica HOM05D000023 ORTHO05D002750 8.4e-07 57.4 103 37.9
SHI15393 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-06 57.0 75 37.3
Hund20670 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.1e-06 57.0 106 32.1
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.4e-06 55.8 53 47.2
Lj6P498T15 Lonicera japonica HOM05D000023 ORTHO05D002750 3.2e-06 55.5 103 35.0
Nn2g14207 Nelumbo nucifera HOM05D048985 ORTHO05D010901 3.2e-06 55.5 115 27.8
MBI06_g04760_MAGBIO Magnolia biondii HOM05D008170 ORTHO05D010746 4.2e-06 55.1 58 43.1
C03p28870 Brassica napus HOM05D000023 ORTHO05D000014 5.5e-06 54.7 55 45.5
Glyma.07G163900 Glycine max HOM05D000023 ORTHO05D000014 5.5e-06 54.7 48 43.8
Lj9P677T25 Lonicera japonica HOM05D000023 ORTHO05D002750 5.5e-06 54.7 103 35.9
THA.LOC104804899 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 5.5e-06 54.7 95 28.4
TWI09G0787 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.5e-06 54.7 57 38.6
TWI38G0651 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.5e-06 54.7 57 38.6
TWI63G0881 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.5e-06 54.7 57 38.6
TWI63G1486 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.5e-06 54.7 57 38.6
TWI73G1202 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.5e-06 54.7 57 38.6
TWI81G1016 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.5e-06 54.7 57 38.6
Lj9C56T3 Lonicera japonica HOM05D000023 ORTHO05D002750 7.1e-06 54.3 103 34.0
HanXRQChr13g0409081 Helianthus annuus HOM05D000023 ORTHO05D000014 9.3e-06 53.9 100 37.0
Lj4P405T3 Lonicera japonica HOM05D000023 ORTHO05D000014 9.3e-06 53.9 103 36.9
Lj8P366T21 Lonicera japonica HOM05D000023 ORTHO05D002750 9.3e-06 53.9 103 33.0


User provided reference genes

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