Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 2018.0 1050 100.0
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1929.5 1051 95.2
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1855.1 1050 91.4
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 0.0e+00 1308.5 760 88.0
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1282.7 1008 66.1
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1253.0 1033 62.8
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1247.6 1022 64.3
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1246.5 1022 64.3
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1245.7 1128 59.8
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1240.3 1028 64.4
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1236.5 1012 64.8
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1234.9 1040 63.2
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1234.2 1015 63.3
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1232.2 1011 63.7
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1221.1 1019 64.7
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1217.6 1042 62.0
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1215.7 981 64.4
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1203.7 1034 61.0
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1203.3 1013 62.4
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1203.3 992 62.5
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1201.8 1022 62.7
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1197.6 1011 62.4
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1195.6 1016 61.6
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1190.3 1030 61.0
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1189.5 1006 61.5
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1186.8 1026 61.2
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1183.7 935 64.0
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1181.4 1007 62.5
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1180.6 1032 61.7
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1179.9 970 62.3
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1178.7 1030 60.8
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1175.2 1011 61.3
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1173.7 1015 61.5
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1172.1 1032 60.4
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1171.4 1017 61.1
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1169.5 1006 60.5
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1162.1 1013 60.8
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1157.5 1008 60.5
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1154.0 1015 60.1
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1153.7 957 63.8
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1148.7 1006 61.1
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1142.1 1026 59.3
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1136.7 1016 58.3
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1135.6 1023 59.5
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1021 57.9
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1131.3 1039 59.5
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1129.4 1032 58.0
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1123.2 1028 59.6
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1122.5 1051 58.6
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1122.1 1009 58.6
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1121.3 1021 58.7
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1119.4 1016 59.0
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1118.6 1030 57.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1118.2 1011 58.6
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1117.4 1020 58.5
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1115.1 1010 59.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1112.4 1021 57.4
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1112.1 1044 57.3
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1110.1 998 58.4
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1108.6 1030 58.2
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1105.1 1043 56.7
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1102.4 1012 57.8
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1098.2 1025 58.1
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1093.6 1030 56.8
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1093.2 1041 56.5
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1088.2 1013 57.9
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1085.9 1049 56.1
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1084.7 1050 55.5
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1083.2 1012 57.7
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 2.2e-311 1072.4 1013 56.9
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 7.1e-310 1067.4 1040 55.5
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 7.1e-310 1067.4 1040 55.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 3.0e-308 1062.0 1028 56.0
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 5.1e-308 1061.2 1042 55.1
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.5e-307 1059.7 1015 57.6
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 5.6e-307 1057.7 1043 55.7
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 9.6e-307 1057.0 1039 55.3
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 3.6e-306 1055.0 1039 55.2
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 2.0e-304 1049.3 1020 54.9
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 2.9e-303 1045.4 1051 54.4
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 8.4e-303 1043.9 1064 54.1
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 4.9e-295 1018.1 1006 56.3
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 8.4e-295 1017.3 1035 53.7
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 2.9e-287 992.3 1024 52.7
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 2.6e-280 969.1 1054 51.4
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.8e-274 949.1 743 65.5
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.7e-269 932.6 1158 47.6
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 7.9e-269 931.0 840 57.7
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 4.1e-265 918.7 738 64.4
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.6e-264 916.0 738 64.5
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 2.9e-263 912.5 922 53.3
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 6.3e-258 894.8 1027 50.0
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.7e-255 886.7 769 59.7
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 5.0e-255 885.2 745 61.5
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 2.6e-251 872.8 1023 49.1
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 7.5e-219 765.0 560 70.5
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 3.3e-214 749.6 1007 45.8
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 8.6e-207 724.9 638 58.8
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 1.9e-193 680.6 559 62.3
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.0e-191 674.9 652 56.4
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 5.6e-190 669.1 1032 39.4
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 3.4e-187 659.8 626 56.2
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 7.1e-169 599.0 921 38.8
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.3e-167 594.7 890 40.3
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.2e-157 558.9 698 46.4
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 6.5e-154 549.3 988 36.8
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.5e-142 511.5 659 45.8
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.8e-141 507.3 428 60.7
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 5.1e-90 337.0 340 52.1
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.6e-88 330.9 248 67.7
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 1.4e-79 302.4 232 66.8
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 3.1e-79 301.2 888 28.8
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-73 282.3 423 38.8
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.9e-73 282.0 380 44.5
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 5.6e-73 280.4 272 54.0
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.6e-72 278.9 782 32.6
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.9e-65 255.4 204 62.7
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 2.4e-63 248.4 353 42.5
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 2.0e-62 245.4 907 27.1
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 6.5e-61 240.4 240 55.4
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 3.0e-58 231.5 194 58.8
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.1e-57 229.6 306 45.1
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.1e-56 225.3 253 50.2
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.5e-38 166.0 133 67.7
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 6.5e-37 160.6 263 43.0
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.9e-36 159.1 108 73.1
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 2.0e-22 112.5 86 67.4
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 5.5e-20 104.4 76 65.8
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 3.0e-18 98.6 727 22.1
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 2.0e-17 95.9 68 67.6
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 5.7e-17 94.4 68 66.2
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 9.8e-17 93.6 76 60.5
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.3e-13 83.2 76 52.6
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 3.6e-11 75.1 52 71.2
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 8.8e-10 70.5 46 71.7
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 2.2e-08 65.9 91 46.2
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.5e-06 58.5 79 39.2


User provided reference genes

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