Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 1.1e-101 373.2 184 100.0
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.5e-77 292.4 162 89.5
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.7e-73 279.6 167 84.4
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 2.1e-52 209.5 187 65.8
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 1.1e-21 107.5 150 44.7
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.3e-20 104.0 182 41.2
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.3e-20 104.0 147 42.9
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 3.7e-20 102.4 173 38.7
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 6.9e-19 98.2 165 38.8
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 2.0e-18 96.7 152 40.1
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.6e-18 96.3 179 37.4
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 4.5e-18 95.5 167 40.7
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 1.3e-17 94.0 175 37.7
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.3e-17 94.0 150 44.0
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 2.2e-17 93.2 167 40.7
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 2.9e-17 92.8 179 39.1
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.4e-16 90.5 181 36.5
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.4e-16 90.5 181 36.5
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.4e-16 90.5 158 42.4
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.5e-16 89.7 121 47.1
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 3.2e-16 89.4 165 38.8
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.2e-15 87.4 164 40.2
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 2.1e-15 86.7 120 45.0
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 2.7e-15 86.3 119 47.9
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 4.7e-15 85.5 178 36.0
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 4.7e-15 85.5 157 38.2
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 4.7e-15 85.5 156 37.8
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 6.1e-15 85.1 175 37.1
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 7.9e-15 84.7 154 39.6
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.0e-14 84.3 156 35.3
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.8e-14 83.6 183 37.2
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.8e-14 83.6 140 40.0
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 2.3e-14 83.2 170 36.5
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 3.0e-14 82.8 196 37.2
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 6.7e-14 81.6 102 44.1
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.1e-13 80.9 114 45.6
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 1.5e-13 80.5 164 35.4
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.5e-13 80.5 119 44.5
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 2.0e-13 80.1 181 35.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.6e-13 79.7 156 35.9
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 5.7e-13 78.6 96 47.9
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 7.4e-13 78.2 95 46.3
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 7.4e-13 78.2 83 55.4
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 1.7e-12 77.0 166 35.5
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 1.7e-12 77.0 96 51.0
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 2.2e-12 76.6 171 37.4
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 2.2e-12 76.6 112 43.8
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 2.2e-12 76.6 95 47.4
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.2e-12 76.6 165 38.8
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.8e-12 76.3 110 45.5
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 3.7e-12 75.9 163 36.8
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 4.8e-12 75.5 171 38.6
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 4.8e-12 75.5 160 38.8
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 8.2e-12 74.7 160 38.1
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 8.2e-12 74.7 157 36.9
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.1e-11 74.3 179 35.8
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.4e-11 73.9 115 44.3
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.8e-11 73.6 168 32.7
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 1.8e-11 73.6 97 48.5
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 2.4e-11 73.2 112 42.0
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 3.1e-11 72.8 164 36.6
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 3.1e-11 72.8 169 34.9
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 3.1e-11 72.8 169 34.9
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 3.1e-11 72.8 169 34.9
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 3.1e-11 72.8 151 39.1
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 4.1e-11 72.4 159 33.3
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 4.1e-11 72.4 170 36.5
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 7.0e-11 71.6 100 44.0
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 7.0e-11 71.6 103 46.6
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 1.2e-10 70.9 170 31.8
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 3.5e-10 69.3 180 35.0
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 4.5e-10 68.9 95 42.1
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 5.9e-10 68.6 161 36.0
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 5.9e-10 68.6 161 36.0
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 7.7e-10 68.2 92 43.5
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 7.7e-10 68.2 105 39.0
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.3e-09 67.4 164 34.1
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 2.9e-09 66.2 92 43.5
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.9e-09 66.2 79 45.6
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 3.8e-09 65.9 167 34.7
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 5.0e-09 65.5 118 41.5
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 5.0e-09 65.5 148 33.1
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 5.0e-09 65.5 204 28.9
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 6.5e-09 65.1 104 43.3
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 8.5e-09 64.7 127 40.9
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 7.2e-08 61.6 82 42.7
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 9.4e-08 61.2 152 34.9
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 1.2e-07 60.8 193 33.7
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 1.2e-07 60.8 193 33.7
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 1.2e-07 60.8 98 41.8
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 2.1e-07 60.1 193 33.2
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 3.6e-07 59.3 99 42.4
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 6.1e-07 58.5 130 33.8
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 8.0e-07 58.2 192 32.3
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 8.0e-07 58.2 101 39.6
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.0e-06 57.8 100 42.0
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 2.3e-06 56.6 98 41.8
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 2.3e-06 56.6 99 41.4
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 5.2e-06 55.5 99 42.4
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 5.2e-06 55.5 51 60.8
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 8.8e-06 54.7 115 37.4
unitig_32.g11793 Utricularia gibba HOM05D008015 ORTHO05D009180 8.8e-06 54.7 113 36.3


User provided reference genes

Program Settings