Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 6.2e-78 293.9 133 100.0
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 7.9e-65 250.4 118 95.8
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-63 246.5 131 86.3
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 5.7e-55 217.6 122 73.8
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.1e-53 213.4 121 72.7
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.3e-53 211.1 125 70.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 6.9e-53 210.7 124 68.5
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.0e-52 209.1 121 71.9
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.0e-52 209.1 123 69.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.0e-52 209.1 123 69.9
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.0e-52 209.1 125 68.0
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.0e-52 209.1 127 69.3
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.4e-52 208.4 118 72.0
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.4e-52 208.4 123 70.7
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.4e-52 208.4 126 69.0
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 5.9e-52 207.6 124 70.2
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 5.9e-52 207.6 124 70.2
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.7e-52 207.2 124 67.7
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 7.7e-52 207.2 128 67.2
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.0e-51 206.8 125 68.8
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.0e-51 206.8 125 68.8
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.0e-51 206.8 124 70.2
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.3e-51 206.5 125 65.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.7e-51 206.1 124 67.7
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.2e-51 205.7 125 68.0
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.2e-51 205.7 123 67.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 2.9e-51 205.3 125 67.2
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.8e-51 204.9 125 68.0
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 3.8e-51 204.9 124 66.9
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.8e-51 204.9 125 68.0
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 5.0e-51 204.5 124 70.2
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 6.5e-51 204.1 125 66.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 6.5e-51 204.1 124 69.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 6.5e-51 204.1 120 72.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 6.5e-51 204.1 125 65.6
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 8.5e-51 203.8 123 68.3
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 8.5e-51 203.8 125 64.8
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 8.5e-51 203.8 119 72.3
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.1e-50 203.4 124 64.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.1e-50 203.4 124 66.1
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.1e-50 203.4 124 65.3
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.4e-50 203.0 120 72.5
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.4e-50 203.0 125 67.2
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.4e-50 203.0 124 66.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.4e-50 203.0 124 65.3
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.4e-50 203.0 125 68.0
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.4e-50 203.0 124 68.5
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.9e-50 202.6 120 70.8
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.9e-50 202.6 125 68.0
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.9e-50 202.6 123 65.9
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.2e-50 201.8 119 71.4
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 3.2e-50 201.8 120 70.0
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 3.2e-50 201.8 120 65.8
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.2e-50 201.8 123 67.5
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 3.2e-50 201.8 125 66.4
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.2e-50 201.8 125 64.8
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 4.2e-50 201.4 125 66.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.2e-50 201.4 121 67.8
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 4.2e-50 201.4 120 70.8
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 4.2e-50 201.4 125 64.0
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.2e-50 201.4 125 65.6
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.5e-50 201.1 125 64.0
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 7.2e-50 200.7 126 67.5
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.2e-49 199.9 125 66.4
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.2e-49 199.9 124 65.3
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-49 199.9 125 64.0
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.6e-49 199.5 125 66.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-49 199.5 121 70.2
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.6e-49 199.5 120 69.2
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 2.1e-49 199.1 125 66.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.1e-49 199.1 124 65.3
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.1e-49 199.1 127 60.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.1e-49 199.1 127 60.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 2.1e-49 199.1 124 66.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.1e-49 197.6 125 65.6
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 6.1e-49 197.6 125 66.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.1e-49 197.6 124 68.5
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 7.9e-49 197.2 120 70.8
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-48 196.8 125 65.6
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.0e-48 196.8 123 67.5
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.0e-48 196.8 128 64.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.4e-48 196.4 124 64.5
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-48 196.4 121 66.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.4e-48 196.4 124 65.3
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.4e-48 196.4 118 69.5
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.4e-48 196.4 123 65.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.4e-48 196.4 120 70.0
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 3.0e-48 195.3 120 65.8
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 3.9e-48 194.9 124 65.3
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 5.1e-48 194.5 123 65.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 6.7e-48 194.1 124 64.5
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 6.7e-48 194.1 124 64.5
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 6.7e-48 194.1 124 63.7
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 6.7e-48 194.1 124 65.3
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 8.8e-48 193.7 124 64.5
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 8.8e-48 193.7 124 65.3
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.1e-47 193.4 121 66.1
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.5e-47 193.0 124 62.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.5e-47 193.0 124 63.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.0e-47 192.6 124 64.5
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.0e-47 192.6 128 60.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.6e-47 192.2 123 65.9
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.4e-47 191.4 123 64.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.4e-47 190.7 125 60.8
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 9.7e-47 190.3 124 64.5
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 9.7e-47 190.3 124 64.5
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.8e-46 188.7 121 65.3
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.8e-46 188.7 125 64.0
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.7e-46 188.3 126 62.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 3.7e-46 188.3 117 68.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 4.8e-46 188.0 125 60.8
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 6.3e-46 187.6 120 66.7
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.3e-46 187.6 120 66.7
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 3.1e-45 185.3 111 72.1
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 7.0e-45 184.1 125 61.6
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 9.1e-45 183.7 120 66.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.1e-45 183.7 120 65.0
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 9.1e-45 183.7 121 64.5
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.5e-44 183.0 125 60.0
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.5e-44 183.0 118 63.6
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 2.6e-44 182.2 163 52.1
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 7.7e-44 180.6 117 65.8
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.8e-43 178.3 123 61.8
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.4e-42 176.4 117 65.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.2e-42 174.9 125 65.6
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.7e-41 171.4 117 62.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 6.1e-41 171.0 122 60.7
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 6.7e-40 167.5 106 66.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.8e-40 167.2 128 61.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.1e-39 166.8 126 55.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.0e-39 166.0 117 61.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.6e-39 165.6 104 66.3
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 2.8e-38 162.2 119 56.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.8e-38 162.2 115 60.0
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-37 159.8 125 53.6
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.1e-37 158.3 127 59.1
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.9e-36 154.5 125 56.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 6.5e-35 151.0 124 56.5
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.5e-31 139.8 87 67.8
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 3.7e-30 135.2 131 48.1
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.8e-30 134.8 85 67.1
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 5.3e-29 131.3 86 67.4
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 4.5e-28 128.3 87 62.1
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.4e-23 111.7 64 75.0
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 2.4e-21 105.9 74 66.2
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.7e-20 102.4 109 45.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-19 100.1 67 59.7
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-18 97.1 63 66.7
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.7e-17 91.7 78 53.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 6.8e-16 87.8 80 52.5


User provided reference genes

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