Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 4.0e-72 274.6 135 100.0
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.4e-61 239.6 121 95.0
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 3.2e-61 238.4 121 94.2
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.7e-54 216.1 121 84.3
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 3.5e-52 208.4 121 81.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.1e-50 203.4 121 74.4
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 2.5e-50 202.2 121 77.7
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 7.3e-50 200.7 121 76.9
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.1e-49 199.1 125 74.4
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 2.1e-49 199.1 121 76.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 2.8e-49 198.7 123 75.6
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 3.6e-49 198.4 116 79.3
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 3.6e-49 198.4 121 75.2
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 4.7e-49 198.0 121 74.4
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 6.2e-49 197.6 116 79.3
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 8.1e-49 197.2 124 74.2
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.8e-48 196.1 121 76.0
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 4.0e-48 194.9 120 74.2
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.0e-48 194.9 115 75.7
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.0e-48 194.9 121 75.2
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 4.0e-48 194.9 123 73.2
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 5.2e-48 194.5 122 77.9
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 5.2e-48 194.5 119 73.1
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 5.2e-48 194.5 120 72.5
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 5.2e-48 194.5 120 72.5
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 6.8e-48 194.1 118 74.6
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 8.9e-48 193.7 121 74.4
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-47 193.4 121 76.9
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-47 193.4 120 71.7
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-47 193.4 120 71.7
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.2e-47 193.4 120 72.5
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-47 193.0 121 74.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.5e-47 193.0 120 73.3
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.5e-47 193.0 116 78.4
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.0e-47 192.6 122 74.6
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.0e-47 192.6 121 72.7
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 2.6e-47 192.2 121 73.6
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 3.4e-47 191.8 121 76.0
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 3.4e-47 191.8 121 76.0
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 3.4e-47 191.8 120 70.0
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.4e-47 191.8 120 70.0
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 5.8e-47 191.0 115 74.8
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.8e-47 191.0 121 75.2
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 7.5e-47 190.7 121 73.6
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 7.5e-47 190.7 120 75.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 7.5e-47 190.7 121 71.1
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 9.8e-47 190.3 121 73.6
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 9.8e-47 190.3 121 73.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 9.8e-47 190.3 121 74.4
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 9.8e-47 190.3 118 72.0
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 9.8e-47 190.3 118 72.9
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 9.8e-47 190.3 122 73.8
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.8e-47 190.3 121 73.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.7e-46 189.5 121 75.2
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.7e-46 189.5 122 73.0
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.7e-46 189.5 121 76.9
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.9e-46 188.7 118 73.7
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 3.7e-46 188.3 122 75.4
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 3.7e-46 188.3 121 70.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 3.7e-46 188.3 121 71.9
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.7e-46 188.3 118 72.9
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 3.7e-46 188.3 128 70.3
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 4.9e-46 188.0 116 74.1
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 6.4e-46 187.6 121 72.7
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 6.4e-46 187.6 121 72.7
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 6.4e-46 187.6 121 72.7
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 8.3e-46 187.2 121 70.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 8.3e-46 187.2 122 77.0
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 8.3e-46 187.2 122 73.0
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.1e-45 186.8 118 72.0
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.1e-45 186.8 118 72.0
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.1e-45 186.8 121 72.7
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.9e-45 186.0 149 62.4
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.9e-45 186.0 121 71.9
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 4.1e-45 184.9 120 70.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.1e-45 184.9 121 71.9
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 5.4e-45 184.5 126 70.6
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 5.4e-45 184.5 121 71.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 5.4e-45 184.5 121 69.4
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 7.1e-45 184.1 114 71.9
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 7.1e-45 184.1 121 69.4
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 9.2e-45 183.7 150 63.3
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 9.2e-45 183.7 121 68.6
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.2e-44 183.3 122 70.5
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.2e-44 183.3 122 70.5
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 2.1e-44 182.6 121 71.1
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.1e-44 182.6 131 65.6
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.7e-44 182.2 143 62.9
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.5e-44 181.8 121 71.1
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 4.6e-44 181.4 121 69.4
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 6.0e-44 181.0 121 68.6
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 7.8e-44 180.6 121 67.8
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.0e-43 180.3 140 65.7
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-43 179.9 117 73.5
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.3e-43 179.9 137 65.0
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.7e-43 179.5 121 67.8
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 2.3e-43 179.1 121 68.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 3.0e-43 178.7 115 70.4
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 5.1e-43 177.9 121 68.6
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 5.1e-43 177.9 121 69.4
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.6e-43 177.6 121 67.8
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 6.6e-43 177.6 117 71.8
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 6.6e-43 177.6 124 68.5
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.6e-43 177.2 116 68.1
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.1e-42 176.8 123 68.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.1e-42 176.8 118 68.6
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.5e-42 176.4 121 69.4
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-42 176.4 121 65.3
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.5e-42 176.4 121 66.9
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.9e-42 176.0 122 67.2
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.5e-42 175.6 116 67.2
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.5e-42 175.6 116 67.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 3.3e-42 175.3 122 68.0
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 5.6e-42 174.5 121 65.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 2.1e-41 172.6 117 67.5
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.8e-41 172.2 118 65.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.7e-41 171.4 113 67.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 6.2e-41 171.0 121 65.3
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 8.1e-41 170.6 122 66.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 8.1e-41 170.6 121 64.5
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.2e-39 166.8 118 66.9
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 3.4e-39 165.2 121 64.5
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 6.4e-38 161.0 122 61.5
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.4e-37 159.1 118 56.8
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.2e-37 158.7 118 59.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 4.1e-37 158.3 118 60.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 5.4e-37 157.9 118 58.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 9.2e-37 157.1 114 64.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 3.5e-36 155.2 116 62.9
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 4.6e-36 154.8 118 59.3
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.6e-33 146.4 119 57.1
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.6e-33 146.4 119 57.1
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.1e-32 143.7 125 53.6
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 2.6e-31 139.0 89 68.5
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.3e-30 136.7 85 72.9
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 6.0e-28 127.9 122 53.3
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.0e-27 127.1 76 71.1
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-26 123.6 99 59.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.9e-26 122.9 99 59.6
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.3e-26 120.9 111 50.5
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.4e-23 112.1 99 50.5
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 4.5e-23 111.7 113 51.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 4.5e-23 111.7 83 60.2
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 9.9e-23 110.5 122 44.3
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.2e-22 109.4 119 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.1e-21 107.1 118 45.8
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.5e-20 102.1 119 45.4
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 4.6e-20 101.7 121 44.6
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 7.4e-18 94.4 115 42.6
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.6e-17 93.2 111 39.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.1e-16 89.0 113 41.6
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.4e-15 85.5 54 72.2
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 5.8e-15 84.7 65 58.5
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 7.6e-15 84.3 59 62.7
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-14 82.4 55 74.5
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-14 82.4 55 74.5
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-14 82.4 55 74.5
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 8.4e-14 80.9 55 72.7
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.9e-13 79.7 88 47.7
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 7.1e-13 77.8 112 40.2
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 3.5e-12 75.5 113 36.3
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.8e-11 73.2 93 41.9
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.4e-08 63.5 99 37.4
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 1.2e-07 60.5 63 52.4
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 2.9e-06 55.8 66 47.0


User provided reference genes

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