Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 3.9e-122 441.4 215 100.0
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 4.8e-88 328.2 217 78.3
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 9.8e-73 277.3 218 68.8
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 2.3e-34 149.8 220 48.6
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 2.5e-20 103.2 128 49.2
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.1e-19 100.1 132 45.5
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.8e-18 97.1 145 42.8
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.0e-18 95.9 160 40.6
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.4e-17 92.8 156 42.3
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 4.5e-17 92.4 232 32.8
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.2e-16 90.1 143 42.7
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-15 87.4 113 42.5
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 4.2e-15 85.9 148 43.9
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 4.2e-15 85.9 121 43.0
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.4e-15 85.5 114 43.0
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.2e-14 84.3 122 43.4
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-14 84.0 134 42.5
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.6e-14 84.0 145 42.1
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.1e-14 83.6 114 42.1
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.6e-14 82.4 134 43.3
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.9e-14 81.6 238 30.7
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-13 80.9 141 39.0
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 6.7e-13 78.6 142 39.4
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 6.7e-13 78.6 142 39.4
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 6.7e-13 78.6 148 38.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.3e-11 74.3 117 35.9
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.3e-11 74.3 184 31.5
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.1e-11 73.6 110 40.0
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 2.1e-11 73.6 119 40.3
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 2.8e-11 73.2 156 36.5
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 3.6e-11 72.8 156 35.9
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 4.8e-11 72.4 131 37.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.1e-10 71.2 149 34.9
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.4e-10 70.9 125 36.8
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.9e-10 68.6 162 34.0
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.2e-09 67.8 145 35.9
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.2e-09 67.8 114 39.5
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.5e-09 67.4 129 34.1
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-09 67.4 90 42.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 2.0e-09 67.0 113 38.1
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.0e-09 67.0 138 34.8
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.0e-09 67.0 175 31.4
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.0e-09 67.0 79 43.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.6e-09 66.6 113 38.9
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.6e-09 66.6 142 33.1
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.4e-09 66.2 195 28.7
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.4e-09 66.2 66 50.0
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 4.5e-09 65.9 112 38.4
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 4.5e-09 65.9 144 35.4
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 4.5e-09 65.9 144 35.4
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 4.5e-09 65.9 117 35.9
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 7.6e-09 65.1 116 37.9
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.3e-08 64.3 113 38.1
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-08 64.3 113 38.1
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-08 64.3 113 38.1
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.3e-08 64.3 118 33.1
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.7e-08 63.9 203 30.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.2e-08 63.5 100 39.0
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.2e-08 63.5 113 38.1
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.2e-08 63.5 159 31.4
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 2.9e-08 63.2 113 37.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.9e-08 63.2 132 34.8
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.8e-08 62.8 112 37.5
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 3.8e-08 62.8 146 33.6
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.8e-08 62.8 180 33.3
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 3.8e-08 62.8 98 35.7
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 4.9e-08 62.4 160 31.2
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.9e-08 62.4 121 36.4
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 4.9e-08 62.4 162 32.7
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 6.4e-08 62.0 141 34.0
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 6.4e-08 62.0 141 34.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 6.4e-08 62.0 112 36.6
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 6.4e-08 62.0 151 31.8
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.4e-08 62.0 113 38.1
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 6.4e-08 62.0 156 30.8
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 6.4e-08 62.0 111 35.1
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.4e-08 62.0 144 35.4
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 8.4e-08 61.6 166 33.1
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.1e-07 61.2 141 34.0
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.1e-07 61.2 107 33.6
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.1e-07 61.2 111 36.0
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.1e-07 61.2 180 30.6
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.4e-07 60.8 128 35.2
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.9e-07 60.5 136 33.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.9e-07 60.5 115 35.7
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.9e-07 60.5 65 49.2
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 2.4e-07 60.1 144 31.9
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 4.2e-07 59.3 114 36.8
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.2e-07 59.3 119 31.1
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 7.1e-07 58.5 65 47.7
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 7.1e-07 58.5 65 47.7
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 7.1e-07 58.5 92 34.8
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 7.1e-07 58.5 92 34.8
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.2e-06 57.8 139 32.4
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.2e-06 57.8 79 41.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.6e-06 57.4 146 31.5
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.6e-06 57.4 146 31.5
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.6e-06 57.4 191 33.0
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.1e-06 57.0 71 42.3
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.1e-06 57.0 71 45.1
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.1e-06 57.0 119 35.3
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.7e-06 56.6 112 34.8
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.7e-06 56.6 138 32.6
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.7e-06 56.6 187 33.7
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.7e-06 56.6 69 37.7
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.5e-06 56.2 116 37.1
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 3.5e-06 56.2 110 30.0
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.6e-06 55.8 87 40.2
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 6.0e-06 55.5 67 46.3
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.0e-06 55.5 71 43.7
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.0e-06 55.5 117 36.8
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 6.0e-06 55.5 64 46.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.9e-06 55.1 117 36.8


User provided reference genes

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