Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.2e-65 253.1 127 100.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 3.5e-62 241.5 127 95.3
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.4e-18 95.9 101 56.4
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 2.6e-17 92.4 119 44.5
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 7.6e-17 90.9 117 41.9
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 7.6e-17 90.9 105 49.5
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 6.5e-16 87.8 121 42.1
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-15 87.0 121 44.6
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.1e-15 87.0 129 41.9
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.1e-15 87.0 121 43.0
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-15 86.3 110 47.3
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.5e-15 85.9 134 41.0
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 2.5e-15 85.9 114 45.6
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.2e-15 84.3 110 44.5
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 9.4e-15 84.0 110 42.7
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.4e-15 84.0 110 42.7
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.4e-15 84.0 110 42.7
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 9.4e-15 84.0 110 42.7
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.2e-14 83.6 130 40.0
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.2e-14 83.6 110 44.5
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.6e-14 83.2 98 50.0
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.1e-14 82.8 121 39.7
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.7e-14 82.4 110 42.7
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.7e-14 82.4 143 37.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.6e-14 82.0 144 37.5
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 3.6e-14 82.0 133 40.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 6.1e-14 81.3 110 41.8
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 7.9e-14 80.9 118 45.8
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 7.9e-14 80.9 110 40.9
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.4e-13 80.1 109 42.2
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.4e-13 80.1 130 40.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.4e-13 80.1 121 42.1
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.8e-13 79.7 106 38.7
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.3e-13 79.3 123 39.8
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.3e-13 79.3 133 39.1
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.3e-13 79.3 100 45.0
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.9e-13 78.6 125 37.6
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.9e-13 78.6 121 38.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 5.1e-13 78.2 114 42.1
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 5.1e-13 78.2 110 40.0
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 6.7e-13 77.8 132 37.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 6.7e-13 77.8 105 45.7
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 8.8e-13 77.4 113 38.9
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.1e-12 77.0 97 47.4
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.5e-12 76.6 113 39.8
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.5e-12 76.6 97 47.4
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.5e-12 76.6 105 40.0
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.9e-12 76.3 115 38.3
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.9e-12 76.3 115 38.3
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 1.9e-12 76.3 109 41.3
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.9e-12 76.3 124 40.3
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.9e-12 76.3 117 40.2
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 2.5e-12 75.9 124 40.3
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.5e-12 75.9 108 43.5
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.3e-12 75.5 116 37.9
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.3e-12 75.5 101 39.6
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 4.3e-12 75.1 113 38.9
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 4.3e-12 75.1 113 38.9
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.3e-12 75.1 117 39.3
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 4.3e-12 75.1 123 37.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 7.4e-12 74.3 115 38.3
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.4e-12 74.3 108 43.5
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 9.7e-12 73.9 138 37.0
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.7e-12 73.9 105 43.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.3e-11 73.6 113 38.1
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.3e-11 73.6 113 38.1
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.3e-11 73.6 102 42.2
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.7e-11 73.2 113 38.1
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.7e-11 73.2 103 39.8
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.2e-11 72.8 110 38.2
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 2.8e-11 72.4 110 39.1
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.8e-11 72.4 113 37.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 2.8e-11 72.4 113 37.2
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.7e-11 72.0 122 39.3
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 3.7e-11 72.0 121 37.2
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.8e-11 71.6 118 36.4
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 6.3e-11 71.2 109 40.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 8.2e-11 70.9 127 37.8
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 8.2e-11 70.9 109 40.4
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 8.2e-11 70.9 123 39.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.1e-10 70.5 108 38.9
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.1e-10 70.5 115 39.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.4e-10 70.1 104 39.4
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.8e-10 69.7 137 29.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-10 69.7 123 38.2
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.4e-10 69.3 107 39.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 3.1e-10 68.9 103 40.8
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.1e-10 68.6 117 39.3
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 5.3e-10 68.2 70 50.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 5.3e-10 68.2 116 37.1
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 5.3e-10 68.2 118 39.8
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 6.9e-10 67.8 111 40.5
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 9.1e-10 67.4 114 38.6
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.0e-09 66.2 100 40.0
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.0e-09 66.2 104 39.4
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.0e-09 66.2 70 47.1
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 2.6e-09 65.9 69 53.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 3.4e-09 65.5 113 36.3
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 3.4e-09 65.5 68 50.0
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 4.5e-09 65.1 58 55.2
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 4.5e-09 65.1 107 35.5
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 5.9e-09 64.7 93 39.8
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 7.7e-09 64.3 68 48.5
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.0e-08 63.9 68 48.5
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.0e-08 63.9 109 34.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.3e-08 63.5 120 35.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.3e-08 63.5 107 36.4
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.2e-08 62.8 108 37.0
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 5.0e-08 61.6 61 49.2
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 8.5e-08 60.8 69 47.8
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.1e-07 60.5 93 37.6
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.1e-07 60.5 65 44.6
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.1e-07 60.5 65 44.6
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.4e-07 60.1 93 39.8
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.4e-07 60.1 73 46.6
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.9e-07 59.7 108 37.0
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.9e-07 59.7 103 36.9
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 3.2e-07 58.9 130 29.2
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 4.2e-07 58.5 111 36.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 5.5e-07 58.2 121 33.1
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 5.5e-07 58.2 108 35.2
ECA232G0105 Erigeron canadensis HOM05D004520 ORTHO05D005520 7.2e-07 57.8 91 38.5
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 7.2e-07 57.8 111 32.4
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.4e-07 57.4 112 33.9
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-06 57.0 86 38.4
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.2e-06 57.0 75 41.3
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.2e-06 57.0 75 41.3
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.6e-06 56.6 83 39.8
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.1e-06 56.2 111 31.5
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.7e-06 55.8 86 38.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 4.7e-06 55.1 86 37.2
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.7e-06 55.1 110 33.6
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.7e-06 55.1 110 33.6
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 4.7e-06 55.1 112 32.1
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 6.1e-06 54.7 81 39.5
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 6.1e-06 54.7 81 39.5
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 6.1e-06 54.7 61 45.9
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 7.9e-06 54.3 105 33.3


User provided reference genes

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