Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 1.3e-38 162.5 80 100.0
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 1.3e-33 146.0 81 92.6
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 3.2e-29 131.3 81 82.7
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 6.1e-28 127.1 122 59.8
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 2.8e-25 118.2 74 78.4
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 9.1e-24 113.2 74 74.3
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 2.0e-23 112.1 74 73.0
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 2.6e-23 111.7 74 73.0
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 7.7e-23 110.2 80 70.0
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 7.7e-23 110.2 80 70.0
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.0e-22 109.8 80 71.2
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 2.9e-22 108.2 81 70.4
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 2.9e-22 108.2 78 67.9
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 5.0e-22 107.5 80 67.5
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 8.5e-22 106.7 80 68.8
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 1.9e-21 105.5 65 75.4
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 1.9e-21 105.5 80 68.8
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 3.2e-21 104.8 80 67.5
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 4.2e-21 104.4 72 69.4
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 4.2e-21 104.4 80 66.2
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 4.2e-21 104.4 80 65.0
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 5.5e-21 104.0 80 67.5
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 5.5e-21 104.0 72 66.7
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 9.4e-21 103.2 72 68.1
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 4.7e-20 100.9 80 66.2
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 7.9e-20 100.1 80 66.2
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 1.0e-19 99.8 77 63.6
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.0e-19 99.8 80 67.5
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 1.4e-19 99.4 81 60.5
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.4e-19 99.4 80 58.8
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 2.3e-19 98.6 83 62.7
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 3.0e-19 98.2 80 63.8
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 3.0e-19 98.2 80 63.8
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 3.9e-19 97.8 57 78.9
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 6.7e-19 97.1 75 62.7
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 6.7e-19 97.1 80 62.5
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 8.8e-19 96.7 75 65.3
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.5e-18 95.9 80 62.5
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 1.5e-18 95.9 83 62.7
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 2.0e-18 95.5 80 60.0
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 2.0e-18 95.5 77 59.7
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 2.0e-18 95.5 76 61.8
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 2.6e-18 95.1 76 63.2
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 3.3e-18 94.7 77 62.3
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 3.3e-18 94.7 80 63.8
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 4.4e-18 94.4 70 64.3
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 4.4e-18 94.4 70 64.3
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 4.4e-18 94.4 83 59.0
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 5.7e-18 94.0 80 61.2
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 5.7e-18 94.0 80 62.5
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 5.7e-18 94.0 80 57.5
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 7.4e-18 93.6 80 58.8
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 7.4e-18 93.6 78 57.7
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 7.4e-18 93.6 80 63.8
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 9.7e-18 93.2 80 60.0
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.3e-17 92.8 76 61.8
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 1.7e-17 92.4 76 60.5
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 2.2e-17 92.0 76 61.8
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 2.2e-17 92.0 81 63.0
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 2.8e-17 91.7 78 60.3
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 3.7e-17 91.3 80 58.8
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 3.7e-17 91.3 74 60.8
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 4.8e-17 90.9 78 57.7
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 4.8e-17 90.9 65 69.2
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 4.8e-17 90.9 58 72.4
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 8.2e-17 90.1 81 59.3
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 8.2e-17 90.1 85 56.5
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 1.1e-16 89.7 79 57.0
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 1.1e-16 89.7 82 58.5
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 1.4e-16 89.4 77 59.7
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 1.4e-16 89.4 77 59.7
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 1.4e-16 89.4 77 59.7
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 1.8e-16 89.0 58 72.4
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 2.4e-16 88.6 59 67.8
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 9.1e-16 86.7 63 65.1
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 9.1e-16 86.7 55 74.5
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 9.1e-16 86.7 62 66.1
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 1.6e-15 85.9 65 61.5
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.6e-15 85.9 61 67.2
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 2.6e-15 85.1 63 63.5
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 2.6e-15 85.1 58 65.5
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 2.6e-15 85.1 54 72.2
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 5.0e-14 80.9 60 65.0
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 6.5e-14 80.5 62 62.9
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 8.5e-14 80.1 80 52.5
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 1.5e-13 79.3 57 63.2
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 2.5e-13 78.6 78 53.8
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 1.0e-11 73.2 118 40.7
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 2.0e-10 68.9 46 71.7
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 7.0e-08 60.5 51 58.8
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 1.3e-06 56.2 36 69.4


User provided reference genes

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