Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022754.2 Cucumis melo HOM05D007357 ORTHO05D009314 1.9e-94 349.4 197 100.0
CsaV3_3G030320 Cucumis sativus L. HOM05D007357 ORTHO05D009314 1.8e-89 332.8 197 90.9
ClCG07G002370 Citrullus lanatus HOM05D007357 ORTHO05D009314 6.8e-81 304.3 197 83.2
Sed0001819 Sechium edule HOM05D007357 ORTHO05D009314 5.1e-68 261.5 196 74.0
Sed0016962 Sechium edule HOM05D007357 ORTHO05D009314 4.0e-65 251.9 195 73.3
Haze_08047 Corylus avellana HOM05D007357 ORTHO05D009314 5.7e-43 178.3 198 56.1
Actinidia14748 Actinidia chinensis HOM05D007357 ORTHO05D009314 4.6e-37 158.7 199 49.7
Prupe.5G019800 Prunus persica HOM05D007357 ORTHO05D009314 1.0e-36 157.5 210 51.0
CiPaw.11G103400 Carya illinoinensis HOM05D007357 ORTHO05D009314 1.8e-36 156.8 178 54.5
arahy.Tifrunner.gnm1.ann1.0Q5JCD Arachis hypogaea HOM05D007357 ORTHO05D009314 1.6e-34 150.2 194 52.6
arahy.Tifrunner.gnm1.ann1.JPN6B0 Arachis hypogaea HOM05D007357 ORTHO05D009314 1.6e-34 150.2 194 52.6
CSS0024010 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 1.6e-34 150.2 199 47.7
Cfa012604 Carpinus fangiana HOM05D007357 ORTHO05D009314 3.7e-34 149.1 225 46.7
VMungo1215G1709 Vigna mungo HOM05D007357 ORTHO05D009314 1.1e-33 147.5 192 47.4
MD06G1015900 Malus domestica HOM05D007357 ORTHO05D009314 1.4e-33 147.1 194 50.0
QL02p024644 Quercus lobata HOM05D007357 ORTHO05D009314 6.9e-33 144.8 200 50.5
Phvul.002G128100 Phaseolus vulgaris HOM05D007357 ORTHO05D009314 5.9e-32 141.7 195 45.6
Nitab4.5_0001033g0080 Nicotiana tabacum HOM05D007357 ORTHO05D009314 1.0e-31 141.0 217 43.8
FvH4_5g24040 Fragaria vesca HOM05D007357 ORTHO05D009314 1.3e-31 140.6 125 60.8
FAN18G2492 Fragaria x ananassa HOM05D007357 ORTHO05D009314 1.3e-31 140.6 125 60.8
FAN18G4511 Fragaria x ananassa HOM05D007357 ORTHO05D009314 1.3e-31 140.6 125 60.8
Glyma.01G150100 Glycine max HOM05D007357 ORTHO05D009314 2.9e-31 139.4 197 52.3
Gorai.008G220900 Gossypium raimondii HOM05D007357 ORTHO05D009314 3.8e-31 139.0 193 46.1
Gohir.A12G203400 Gossypium hirsutum HOM05D007357 ORTHO05D009314 6.5e-31 138.3 193 46.1
Rhsim07G0138300 Rhododendron simsii HOM05D007357 ORTHO05D009314 8.5e-31 137.9 196 45.4
RcHm_v2.0_Chr7g0213521 Rosa chinensis HOM05D007357 ORTHO05D009314 1.1e-30 137.5 150 53.3
Gohir.D12G206000 Gossypium hirsutum HOM05D007357 ORTHO05D009314 1.4e-30 137.1 193 45.6
FAN08G0560 Fragaria x ananassa HOM05D007357 ORTHO05D009314 1.9e-30 136.7 125 59.2
Lj2g0006468 Lotus japonicus HOM05D007357 ORTHO05D009314 4.2e-30 135.6 198 49.5
FvH4_3g08760 Fragaria vesca HOM05D007357 ORTHO05D009314 5.5e-30 135.2 125 58.4
COL.COLO4_16848 Corchorus olitorius HOM05D007357 ORTHO05D009314 1.2e-29 134.0 181 47.0
Peaxi162Scf00408g00712 Petunia axillaris HOM05D007357 ORTHO05D009314 6.1e-29 131.7 210 41.9
Sopen08g024580 Solanum pennellii HOM05D007357 ORTHO05D009314 6.1e-29 131.7 206 42.2
TAR629G3058 Trochodendron aralioides HOM05D007357 ORTHO05D009314 6.1e-29 131.7 196 44.9
PGSC0003DMG400030879 Solanum tuberosum HOM05D007357 ORTHO05D009314 1.8e-28 130.2 206 41.7
Cpa.g.sc223.2 Carica papaya HOM05D007357 ORTHO05D009314 2.3e-28 129.8 191 45.0
Cc08_g05250 Coffea canephora HOM05D007357 ORTHO05D009314 3.9e-28 129.0 129 55.8
Manes.17G008100 Manihot esculenta HOM05D007357 ORTHO05D009314 1.1e-27 127.5 173 46.8
Oeu059314.1 Olea europaea HOM05D007357 ORTHO05D009314 5.7e-27 125.2 238 39.1
Ah.07g201200 Amaranthus hybridus HOM05D007357 ORTHO05D009314 7.4e-27 124.8 201 40.3
DCAR_008186 Daucus carota HOM05D007357 ORTHO05D009314 9.7e-27 124.4 201 43.8
Migut.A00548 Erythranthe guttata HOM05D007357 ORTHO05D009314 1.7e-26 123.6 214 40.7
Lsat_1_v5_gn_3_28060 Lactuca sativa HOM05D007357 ORTHO05D009314 4.8e-26 122.1 190 42.6
ECA246G3443 Erigeron canadensis HOM05D007357 ORTHO05D009314 1.1e-25 120.9 195 41.0
HanXRQChr17g0539311 Helianthus annuus HOM05D007357 ORTHO05D009314 1.4e-25 120.6 199 41.7
Nn4g25471 Nelumbo nucifera HOM05D007357 ORTHO05D009314 1.4e-25 120.6 131 52.7
Potri.001G132232 Populus trichocarpa HOM05D007357 ORTHO05D009314 3.1e-25 119.4 178 43.3
CANSAT21G2249 Cannabis sativa HOM05D007357 ORTHO05D009314 4.1e-25 119.0 193 44.0
unitig_32.g10966 Utricularia gibba HOM05D007357 ORTHO05D009314 6.9e-25 118.2 212 40.1
TWI34G1682 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 1.2e-24 117.5 178 42.7
TWI34G1422 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 1.5e-24 117.1 195 41.5
Medtr5g026790 Medicago truncatula HOM05D007357 ORTHO05D009314 2.0e-24 116.7 200 45.5
Oeu042216.1 Olea europaea HOM05D007357 ORTHO05D009314 2.6e-24 116.3 220 40.9
Psat2g142360 Pisum sativum HOM05D007357 ORTHO05D009314 2.6e-24 116.3 195 45.6
CAN.G1269.3 Capsicum annuum HOM05D007357 ORTHO05D009314 4.5e-24 115.5 170 42.9
Ciclev10002529m.g Citrus clementina HOM05D007357 ORTHO05D009314 4.5e-24 115.5 124 55.6
Haze_08057 Corylus avellana HOM05D007357 ORTHO05D009314 4.5e-24 115.5 198 44.4
Lalb_Chr05g0215411 Lupinus albus HOM05D007357 ORTHO05D009314 7.7e-24 114.8 194 46.4
Glyma.09G214200 Glycine max HOM05D007357 ORTHO05D009314 1.0e-23 114.4 196 47.4
Sc07g0008390 Simmondsia chinensis HOM05D007357 ORTHO05D009314 1.0e-23 114.4 169 41.4
AUR62007392 Chenopodium quinoa HOM05D007357 ORTHO05D009314 2.2e-23 113.2 149 45.6
AUR62044266 Chenopodium quinoa HOM05D007357 ORTHO05D009314 3.8e-23 112.5 180 40.0
PSO063G0202 Papaver somniferum HOM05D007357 ORTHO05D009314 8.5e-23 111.3 125 48.0
AUR62027337 Chenopodium quinoa HOM05D007357 ORTHO05D009314 1.1e-22 110.9 120 49.2
CSS0046502 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 3.2e-22 109.4 175 43.4
ATR0829G081 Amborella trichopoda HOM05D007357 ORTHO05D009314 2.1e-21 106.7 194 38.1
Eucgr.D02601 Eucalyptus grandis HOM05D007357 ORTHO05D009314 2.1e-21 106.7 193 38.3
HPP92_025510 Vanilla planifolia HOM05D007357 ORTHO05D009314 1.0e-20 104.4 187 39.0
HPP92_025525 Vanilla planifolia HOM05D007357 ORTHO05D009314 3.0e-20 102.8 187 38.0
MD06G1016600 Malus domestica HOM05D007357 ORTHO05D009314 3.9e-20 102.4 190 43.2
Duzib068G0657 Durio zibethinus HOM05D007357 ORTHO05D009314 1.1e-19 100.9 165 43.6
Aqoxy5G03983 Aquilegia oxysepala HOM05D007357 ORTHO05D009314 1.5e-19 100.5 129 42.6
Solyc08g075930.4 Solanum lycopersicum HOM05D007357 ORTHO05D009314 3.3e-19 99.4 172 40.1
arahy.Tifrunner.gnm1.ann1.L1IIZH Arachis hypogaea HOM05D007357 ORTHO05D009314 1.7e-18 97.1 139 52.5
CDE12G0114 Ceratophyllum demersum HOM05D007357 ORTHO05D009314 1.7e-18 97.1 165 35.8
Os07g0452600 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 1.7e-18 97.1 120 42.5
Nitab4.5_0001786g0050 Nicotiana tabacum HOM05D007357 ORTHO05D009314 4.8e-18 95.5 217 36.4
SGA_v2.0_scaffold89G27413 Striga asiatica HOM05D003343 ORTHO05D003787 4.8e-18 95.5 191 37.7
FAN11G2380 Fragaria x ananassa HOM05D007357 ORTHO05D009314 8.2e-18 94.7 77 63.6
Sabra01G0102000 Salix brachista HOM05D007357 ORTHO05D009314 1.4e-17 94.0 78 61.5
Hund11140 Selenicereus undatus HOM05D007357 ORTHO05D009314 1.4e-17 94.0 134 48.5
TPR.G17258 Trifolium pratense HOM05D007357 ORTHO05D009314 5.3e-17 92.0 195 37.4
ECA240G0146 Erigeron canadensis HOM05D007357 ORTHO05D009314 2.6e-16 89.7 193 33.7
vmacro13970 Vaccinium macrocarpon HOM05D007357 ORTHO05D009314 1.3e-15 87.4 222 33.8
EL10Ac5g11952 Beta vulgaris HOM05D000153 ORTHO05D000118 2.9e-15 86.3 189 38.1
Zm00001eb096560 Zea mays HOM05D007357 ORTHO05D009314 6.5e-15 85.1 184 33.2
Hma1.2p1_1179F.1_g264570 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 8.5e-15 84.7 177 38.4
Thecc.03G316500 Theobroma cacao HOM05D007357 ORTHO05D009314 1.1e-14 84.3 146 43.2
Ca_25098_v3 Cicer arietinum L. HOM05D007357 ORTHO05D009314 6.1e-13 78.6 168 44.6
PSO782G0982 Papaver somniferum HOM05D007357 ORTHO05D009314 8.0e-13 78.2 97 45.4
Os08g0180400 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 5.2e-12 75.5 77 49.4
TWI79G1144 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 1.1e-11 74.3 154 37.7
MD06G1016300 Malus domestica HOM05D007357 ORTHO05D009314 4.4e-11 72.4 59 66.1
CSS0020054 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 1.7e-10 70.5 58 65.5
CSS0037866 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 6.3e-10 68.6 58 63.8
arahy.Tifrunner.gnm1.ann1.F5EPY8 Arachis hypogaea HOM05D007357 ORTHO05D009314 4.5e-08 62.4 50 64.0
Zm00001eb171770 Zea mays HOM05D007357 ORTHO05D009314 7.7e-08 61.6 149 33.6
Hma1.2p1_0784F.1_g217055 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.3e-07 60.8 84 42.9
Hma1.2p1_0944F.1_g240000 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.3e-07 60.8 84 42.9
Oeu059300.1 Olea europaea HOM05D007357 ORTHO05D009314 4.2e-06 55.8 62 51.6


User provided reference genes

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