Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.1e-129 466.8 261 100.0
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.5e-83 313.5 273 67.8
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 6.3e-50 201.8 177 69.5
CsaV3_3G030050 Cucumis sativus L. HOM05D008218 ORTHO05D010347 8.5e-47 191.4 119 83.2
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.5e-38 164.1 275 42.5
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 8.9e-36 154.8 163 55.2
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.2e-35 154.5 260 46.5
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 3.4e-35 152.9 156 61.5
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 5.7e-35 152.1 312 36.9
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 7.5e-35 151.8 273 42.5
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 9.8e-35 151.4 297 41.4
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.3e-34 151.0 179 55.9
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.7e-34 150.6 171 53.2
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 3.7e-34 149.4 134 62.7
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 4.9e-34 149.1 273 43.6
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.1e-33 147.9 155 59.4
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.4e-33 147.5 154 57.1
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.8e-33 147.1 265 44.2
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.4e-33 146.7 151 57.6
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 3.2e-33 146.4 261 42.9
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 5.4e-33 145.6 172 55.2
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 9.2e-33 144.8 142 61.3
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.9e-32 142.1 285 41.4
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 7.8e-32 141.7 305 39.3
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.3e-31 141.0 123 66.7
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 3.0e-31 139.8 152 52.6
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.0e-31 139.8 167 54.5
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 5.0e-31 139.0 174 52.3
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.6e-31 138.7 151 55.6
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 8.6e-31 138.3 156 58.3
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-30 137.9 259 39.0
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.5e-30 137.5 153 57.5
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.9e-30 137.1 160 48.8
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 1.9e-30 137.1 160 54.4
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.9e-30 137.1 128 60.2
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 1.9e-30 137.1 162 53.7
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 5.6e-30 135.6 261 39.5
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 7.3e-30 135.2 137 59.1
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 7.3e-30 135.2 269 39.8
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 9.5e-30 134.8 153 55.6
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.2e-29 134.4 168 54.8
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.2e-29 134.4 267 36.3
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.6e-29 134.0 164 51.2
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.6e-29 134.0 164 51.2
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.6e-29 134.0 256 39.8
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.6e-29 134.0 155 52.9
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 2.1e-29 133.7 270 42.6
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 2.8e-29 133.3 133 60.2
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.6e-29 132.9 258 38.4
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 4.7e-29 132.5 152 49.3
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 6.2e-29 132.1 180 46.7
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 8.0e-29 131.7 285 40.7
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 8.0e-29 131.7 131 58.0
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.0e-28 131.3 151 55.6
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.8e-28 130.6 166 51.2
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.8e-28 130.6 275 40.0
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 3.1e-28 129.8 126 64.3
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.0e-28 129.4 133 60.2
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 4.0e-28 129.4 131 53.4
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 4.0e-28 129.4 256 40.2
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 5.2e-28 129.0 276 37.7
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.2e-27 127.9 264 39.4
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.5e-27 127.5 264 39.0
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.0e-27 127.1 258 39.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.6e-27 126.7 142 49.3
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.4e-27 126.3 185 48.1
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 4.4e-27 125.9 135 57.8
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 5.8e-27 125.6 129 63.6
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 7.5e-27 125.2 168 56.0
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 7.5e-27 125.2 129 63.6
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 7.5e-27 125.2 149 57.7
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.2e-26 123.6 129 63.6
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.2e-26 123.6 129 63.6
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 3.7e-26 122.9 154 53.2
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.7e-26 122.9 139 57.6
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 6.4e-26 122.1 139 55.4
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 8.3e-26 121.7 139 57.6
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 1.4e-25 120.9 146 50.0
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.4e-25 120.9 265 40.4
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 3.2e-25 119.8 166 46.4
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 3.2e-25 119.8 139 53.2
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 9.2e-25 118.2 153 52.9
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 9.2e-25 118.2 118 53.4
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 2.7e-24 116.7 148 52.0
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.7e-24 116.7 148 52.0
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 2.7e-24 116.7 148 52.0
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 7.8e-24 115.2 136 53.7
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 7.8e-24 115.2 220 39.5
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 3.0e-23 113.2 146 52.1
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.0e-23 113.2 111 64.0
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 5.0e-23 112.5 143 53.1
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.5e-22 110.2 258 36.4
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 3.3e-22 109.8 176 46.0
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.3e-22 109.4 258 37.2
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 9.5e-22 108.2 144 50.7
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 9.5e-22 108.2 139 53.2
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.2e-21 107.8 137 52.6
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 2.1e-21 107.1 256 39.1
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 2.8e-21 106.7 138 51.4
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 3.6e-21 106.3 137 51.8
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 4.7e-21 105.9 126 49.2
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 8.1e-21 105.1 243 32.5
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 2.3e-20 103.6 121 54.5
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.1e-20 103.2 183 39.9
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 3.1e-20 103.2 137 48.9
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 5.2e-20 102.4 140 50.0
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.2e-20 102.4 131 45.8
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 8.9e-20 101.7 179 39.7
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 2.0e-19 100.5 260 34.2
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 5.8e-19 99.0 155 46.5
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.7e-18 97.4 155 47.7
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.2e-18 97.1 220 37.7
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.2e-18 97.1 220 37.7
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 2.9e-18 96.7 187 40.6
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 6.4e-18 95.5 134 43.3
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 4.1e-17 92.8 158 42.4
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 9.2e-17 91.7 117 49.6
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 6.0e-16 89.0 115 47.8
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 6.0e-16 89.0 124 41.1
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.1e-14 84.7 109 48.6
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 4.3e-14 82.8 123 38.2
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 2.8e-13 80.1 83 57.8
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 4.7e-13 79.3 124 38.7
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 4.7e-13 79.3 123 44.7
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 2.3e-12 77.0 160 37.5
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 5.8e-11 72.4 202 30.2
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 1.3e-10 71.2 138 43.5
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 1.7e-10 70.9 41 75.6
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 1.9e-09 67.4 190 37.4
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.2e-09 65.1 229 32.3
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 4.6e-08 62.8 160 37.5
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 1.3e-07 61.2 122 42.6
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 3.0e-07 60.1 129 38.0
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 1.9e-06 57.4 172 32.0
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.5e-06 57.0 129 41.1
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 5.6e-06 55.8 170 29.4


User provided reference genes

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