Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 0.0e+00 1611.7 785 100.0
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1540.4 785 95.2
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 0.0e+00 1395.6 752 90.2
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1366.7 785 84.6
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1354.3 775 84.6
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1111.3 784 69.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1107.4 779 69.7
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1088.2 787 68.5
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1088.2 781 69.0
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 781 68.6
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1086.2 781 69.0
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1085.9 781 68.2
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 787 68.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 784 68.2
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 774 68.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.7e-311 1071.6 778 67.5
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.1e-310 1069.7 781 67.3
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.1e-310 1069.7 786 67.9
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 4.1e-310 1067.8 781 67.5
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.1e-310 1067.8 781 67.5
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.9e-310 1067.0 781 67.5
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.6e-306 1054.7 784 66.5
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.6e-306 1054.7 783 66.3
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 785 66.1
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 3.7e-303 1044.6 785 66.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.5e-301 1039.3 786 65.9
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 2.5e-299 1031.9 780 66.2
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-299 1031.2 773 66.1
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 785 65.7
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 4.7e-298 1027.7 778 65.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.0e-297 1026.5 778 65.9
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 6.7e-297 1023.8 791 64.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 786 65.1
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-296 1022.7 785 64.8
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.0e-296 1022.3 786 64.6
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 829 62.5
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 4.1e-294 1014.6 781 65.2
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 7.0e-294 1013.8 775 64.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 7.0e-294 1013.8 778 64.5
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 7.0e-294 1013.8 784 65.2
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.6e-293 1012.7 772 65.8
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.6e-293 1012.7 791 63.8
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 786 65.1
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 775 64.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 5.9e-293 1010.7 777 64.0
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 7.7e-293 1010.4 789 65.0
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 775 63.7
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 3.2e-291 1005.0 775 64.0
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 4.2e-291 1004.6 777 64.6
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 772 64.9
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.6e-290 1002.7 793 64.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 8.0e-290 1000.3 778 64.9
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.4e-289 999.6 778 63.4
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.8e-289 999.2 805 63.4
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 3.0e-289 998.4 775 64.6
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 3.0e-289 998.4 778 64.8
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 4.0e-289 998.0 771 63.8
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-288 996.5 773 65.3
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 1.1e-288 996.5 778 64.3
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 4.4e-288 994.6 775 64.4
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 9.7e-288 993.4 780 64.2
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 9.7e-288 993.4 784 62.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 3.7e-287 991.5 775 64.5
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-286 989.9 777 63.8
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.4e-286 989.6 772 64.4
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.7e-285 985.3 779 63.2
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.7e-285 983.8 772 64.1
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.3e-284 983.0 780 63.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.2e-283 978.4 775 64.1
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.5e-283 977.6 773 64.6
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 7.2e-283 977.2 784 63.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 9.4e-283 976.9 775 63.5
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.6e-282 974.9 777 62.7
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 4.7e-282 974.5 790 62.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.0e-282 973.8 777 62.3
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.0e-281 973.4 777 63.3
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.8e-281 970.7 777 62.7
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.5e-280 969.5 777 64.2
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.6e-280 968.8 778 62.7
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 3.4e-280 968.4 777 62.3
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.4e-280 968.4 780 63.1
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.7e-279 966.1 771 64.1
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.3e-279 964.1 775 63.0
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 5.4e-278 961.1 773 62.0
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.1e-274 949.1 782 61.8
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.8e-273 944.1 772 62.8
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.2e-272 943.3 781 61.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.5e-272 943.0 787 61.0
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 7.5e-272 940.6 770 61.9
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.3e-271 939.9 811 59.1
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 4.9e-271 937.9 782 61.9
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.3e-271 937.6 777 61.3
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 5.4e-270 934.5 773 61.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 9.2e-270 933.7 768 61.1
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.6e-269 932.9 779 60.1
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.0e-269 932.6 740 63.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 2.7e-269 932.2 740 62.8
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 7.7e-269 930.6 781 61.5
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.0e-268 930.2 784 61.0
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.9e-267 926.0 783 61.0
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.3e-267 924.9 778 60.0
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 7.3e-267 924.1 802 59.1
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.1e-266 922.5 769 60.3
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.1e-266 922.5 783 59.9
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.6e-266 921.8 775 59.6
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 6.1e-266 921.0 778 59.5
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 6.1e-266 921.0 777 59.6
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.0e-265 920.2 775 59.5
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 3.0e-265 918.7 775 58.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.0e-264 916.0 773 60.9
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 3.7e-263 911.8 782 59.1
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.7e-263 911.8 748 62.8
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.4e-262 909.8 774 59.9
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.4e-262 909.8 772 60.4
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 5.4e-262 907.9 773 59.5
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 5.6e-259 897.9 784 58.3
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 7.3e-259 897.5 781 58.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.2e-257 891.3 779 59.2
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 5.2e-257 891.3 777 58.9
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 6.0e-253 877.9 784 57.7
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-249 867.1 781 59.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.4e-249 866.7 780 58.2
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.5e-248 863.2 796 56.5
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 9.8e-248 860.5 771 57.6
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 5.4e-246 854.7 722 60.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.9e-243 846.3 789 57.7
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.6e-240 835.9 765 56.6
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.3e-239 833.6 861 53.8
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.4e-238 830.1 769 58.3
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.3e-236 823.5 772 56.0
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.6e-236 821.2 778 55.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.9e-235 819.7 735 59.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.3e-227 792.3 787 55.3
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 7.3e-227 791.2 787 55.1
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.3e-226 790.4 775 53.4
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 3.3e-211 739.2 709 56.1
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.1e-209 734.2 690 56.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 5.8e-208 728.4 738 52.8
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 7.7e-184 648.3 779 45.1
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.0e-175 621.3 744 45.0
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.6e-173 614.0 763 45.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.8e-169 600.5 803 42.5
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.7e-167 594.0 806 42.2
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 3.6e-165 586.3 769 43.8
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.6e-165 586.3 397 70.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.0e-164 584.7 397 70.5
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.8e-162 576.6 444 63.1
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 3.8e-151 539.7 736 40.9
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 8.0e-149 531.9 421 65.8
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 9.8e-139 498.4 405 62.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.1e-137 495.0 587 46.2
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 3.4e-123 446.8 270 77.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.0e-119 435.3 466 51.7
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.2e-114 417.5 257 75.5
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.6e-109 401.4 456 48.0
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 6.7e-95 352.8 751 32.1
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.6e-72 277.3 280 52.1
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 9.1e-68 262.7 762 29.0
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 4.8e-53 213.8 178 59.6
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 6.3e-53 213.4 292 44.9
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.8e-39 168.7 154 57.1
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.2e-39 167.2 81 86.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.4e-31 142.5 73 82.2
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 6.8e-31 140.2 150 51.3
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.2e-24 117.1 148 43.2
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.9e-21 108.2 136 43.4
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.4e-12 78.6 103 38.8
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 3.0e-10 71.6 64 54.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.9e-10 71.2 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 2.1e-08 65.5 39 71.8


User provided reference genes

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