Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 5.5e-61 237.7 139 100.0
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.8e-36 155.6 133 69.2
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 3.9e-22 108.6 144 50.7
CsaV3_3G030890 Cucumis sativus L. HOM05D002144 ORTHO05D002170 8.9e-19 97.4 50 92.0
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 1.9e-16 89.7 144 43.1
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 6.0e-15 84.7 150 39.3
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.3e-14 82.8 151 44.4
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 5.1e-14 81.6 145 47.6
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 8.7e-14 80.9 147 38.8
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 3.3e-13 79.0 152 42.1
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 3.3e-13 79.0 143 39.9
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 4.3e-13 78.6 150 38.0
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 4.3e-13 78.6 150 38.0
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 4.3e-13 78.6 148 44.6
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 5.6e-13 78.2 152 38.2
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 7.3e-13 77.8 148 47.3
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.6e-12 76.6 138 41.3
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 2.8e-12 75.9 148 44.6
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 4.8e-12 75.1 142 43.7
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 4.8e-12 75.1 156 35.9
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.4e-11 73.6 147 46.3
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 1.8e-11 73.2 151 39.7
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.8e-11 73.2 151 35.8
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 3.1e-11 72.4 137 35.8
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 4.0e-11 72.0 150 41.3
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 5.3e-11 71.6 43 74.4
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 6.9e-11 71.2 143 37.1
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 9.0e-11 70.9 138 40.6
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 1.2e-10 70.5 142 40.1
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 1.2e-10 70.5 150 37.3
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.5e-10 70.1 142 47.2
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 2.0e-10 69.7 164 32.9
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 2.0e-10 69.7 142 43.7
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 2.6e-10 69.3 132 38.6
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 2.6e-10 69.3 46 73.9
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 3.4e-10 68.9 41 73.2
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 4.4e-10 68.6 139 41.0
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 5.8e-10 68.2 145 33.8
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 7.6e-10 67.8 143 38.5
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 9.9e-10 67.4 139 37.4
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 9.9e-10 67.4 138 43.5
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 1.7e-09 66.6 140 42.9
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 2.9e-09 65.9 142 33.1
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 2.9e-09 65.9 78 50.0
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 3.8e-09 65.5 147 34.0
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 4.9e-09 65.1 131 38.9
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 4.9e-09 65.1 142 34.5
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 6.4e-09 64.7 60 61.7
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 6.4e-09 64.7 149 36.2
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 6.4e-09 64.7 144 40.3
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 6.4e-09 64.7 153 39.9
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 6.4e-09 64.7 138 45.7
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 6.4e-09 64.7 145 34.5
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 8.4e-09 64.3 143 36.4
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.4e-08 63.5 139 39.6
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 1.9e-08 63.2 138 42.8
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 1.9e-08 63.2 145 38.6
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.9e-08 63.2 59 55.9
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.4e-08 62.8 37 75.7
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.4e-08 62.8 37 75.7
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 2.4e-08 62.8 37 75.7
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 3.2e-08 62.4 47 61.7
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 3.2e-08 62.4 39 79.5
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 4.2e-08 62.0 45 68.9
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 4.2e-08 62.0 141 34.8
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 5.4e-08 61.6 146 32.2
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 5.4e-08 61.6 41 68.3
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 7.1e-08 61.2 150 35.3
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 7.1e-08 61.2 59 55.9
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 9.3e-08 60.8 86 43.0
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 9.3e-08 60.8 145 42.8
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 9.3e-08 60.8 143 35.0
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 1.2e-07 60.5 141 34.8
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.1e-07 59.7 43 65.1
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 2.1e-07 59.7 48 60.4
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 2.1e-07 59.7 133 39.1
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 2.7e-07 59.3 43 62.8
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 2.7e-07 59.3 35 77.1
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 2.7e-07 59.3 35 74.3
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 3.5e-07 58.9 39 74.4
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 3.5e-07 58.9 141 31.2
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 4.6e-07 58.5 145 32.4
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 4.6e-07 58.5 35 74.3
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 4.6e-07 58.5 42 64.3
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 4.6e-07 58.5 39 71.8
PSO223G0023 Papaver somniferum HOM05D002144 ORTHO05D002170 7.9e-07 57.8 141 40.4
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 7.9e-07 57.8 141 30.5
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 1.0e-06 57.4 35 71.4
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 1.0e-06 57.4 142 41.5
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 1.0e-06 57.4 141 42.6
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 1.0e-06 57.4 40 67.5
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 1.0e-06 57.4 40 67.5
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 1.0e-06 57.4 40 67.5
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-06 57.0 150 31.3
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-06 57.0 48 60.4
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 1.3e-06 57.0 48 60.4
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 1.3e-06 57.0 48 60.4
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 1.3e-06 57.0 135 44.4
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 1.3e-06 57.0 44 61.4
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 1.3e-06 57.0 82 43.9
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 1.7e-06 56.6 149 34.9
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 1.7e-06 56.6 140 40.0
Os09g0437500 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 1.7e-06 56.6 152 42.1
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 1.7e-06 56.6 79 41.8
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 2.3e-06 56.2 43 65.1
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 2.3e-06 56.2 43 60.5
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.0e-06 55.8 80 45.0
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 3.9e-06 55.5 69 49.3
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 3.9e-06 55.5 69 49.3
Pp3c20_21690 Physcomitrium patens HOM05D003630 ORTHO05D004151 3.9e-06 55.5 163 28.2
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 5.1e-06 55.1 36 63.9
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 5.1e-06 55.1 36 63.9
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 74.2
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 6.6e-06 54.7 142 39.4
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 6.6e-06 54.7 32 78.1
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 8.7e-06 54.3 32 71.9


User provided reference genes

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