Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 7.8e-59 230.3 122 100.0
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 1.6e-51 206.1 122 91.8
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 1.3e-37 159.8 100 83.0
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 7.3e-33 144.1 119 67.2
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 1.6e-27 126.3 99 69.7
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 9.6e-17 90.5 101 49.5
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 1.4e-15 86.7 101 50.5
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 1.4e-15 86.7 101 50.5
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.4e-15 85.9 92 52.2
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 4.0e-15 85.1 92 52.2
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 1.5e-14 83.2 114 43.0
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 9.9e-14 80.5 101 46.5
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 9.9e-14 80.5 90 44.4
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.7e-13 79.7 92 42.4
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 1.7e-13 79.7 92 50.0
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 1.7e-13 79.7 98 45.9
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 2.9e-13 79.0 92 42.4
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 4.9e-13 78.2 96 45.8
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 4.9e-13 78.2 98 43.9
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 6.4e-13 77.8 92 41.3
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 6.4e-13 77.8 92 41.3
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 1.4e-12 76.6 99 45.5
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 1.4e-12 76.6 96 40.6
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 1.4e-12 76.6 96 46.9
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 2.4e-12 75.9 100 42.0
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 2.4e-12 75.9 99 41.4
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 4.2e-12 75.1 89 44.9
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 4.2e-12 75.1 96 44.8
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 5.4e-12 74.7 100 42.0
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 7.1e-12 74.3 92 41.3
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 1.6e-11 73.2 86 46.5
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 1.6e-11 73.2 91 42.9
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 2.7e-11 72.4 101 39.6
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 2.7e-11 72.4 95 43.2
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 3.5e-11 72.0 117 40.2
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 4.6e-11 71.6 99 42.4
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 4.6e-11 71.6 92 40.2
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 7.9e-11 70.9 89 48.3
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 1.0e-10 70.5 98 38.8
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 1.0e-10 70.5 110 40.0
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.0e-10 70.5 91 40.7
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 1.0e-10 70.5 105 40.0
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 1.3e-10 70.1 123 37.4
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 1.3e-10 70.1 92 42.4
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 1.3e-10 70.1 100 39.0
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 1.3e-10 70.1 92 40.2
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 1.8e-10 69.7 98 41.8
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 1.8e-10 69.7 101 44.6
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 1.8e-10 69.7 92 42.4
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 1.8e-10 69.7 91 41.8
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 3.9e-10 68.6 92 43.5
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 8.7e-10 67.4 85 42.4
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 8.7e-10 67.4 96 41.7
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 1.1e-09 67.0 94 41.5
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 1.1e-09 67.0 87 39.1
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 1.5e-09 66.6 96 37.5
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.5e-09 66.6 93 41.9
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 1.5e-09 66.6 101 40.6
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 2.5e-09 65.9 91 42.9
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 7.4e-09 64.3 91 42.9
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 9.6e-09 63.9 87 42.5
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.6e-08 63.2 105 41.9
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.6e-08 63.2 105 41.9
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 1.6e-08 63.2 94 43.6
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 1.6e-08 63.2 87 40.2
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 2.1e-08 62.8 98 43.9
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 2.8e-08 62.4 92 40.2
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 2.8e-08 62.4 99 37.4
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 3.7e-08 62.0 91 37.4
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 1.8e-07 59.7 95 41.1
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 2.4e-07 59.3 75 45.3
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 3.1e-07 58.9 94 39.4
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 3.1e-07 58.9 91 40.7
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 3.1e-07 58.9 96 38.5
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 4.0e-07 58.5 91 40.7
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 5.3e-07 58.2 91 41.8
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 6.9e-07 57.8 94 40.4
ECA234G1437 Erigeron canadensis HOM05D006176 ORTHO05D007346 6.9e-07 57.8 97 34.0
MSTRG.10943 Avicennia marina HOM05D006176 ORTHO05D007346 9.0e-07 57.4 84 40.5
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 1.5e-06 56.6 94 37.2
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 1.5e-06 56.6 96 38.5
Psat4g168640 Pisum sativum HOM05D006176 ORTHO05D007346 1.5e-06 56.6 64 43.8
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 2.0e-06 56.2 96 38.5
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 2.6e-06 55.8 99 39.4
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 2.6e-06 55.8 98 38.8
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 2.6e-06 55.8 91 38.5
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 3.4e-06 55.5 88 30.7
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 3.4e-06 55.5 89 32.6
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 4.5e-06 55.1 97 37.1
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 5.8e-06 54.7 96 40.6
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 7.6e-06 54.3 88 43.2
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 7.6e-06 54.3 96 36.5
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 7.6e-06 54.3 97 37.1
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 7.6e-06 54.3 97 37.1
HanXRQChr12g0360401 Helianthus annuus HOM05D006176 ORTHO05D007346 7.6e-06 54.3 66 36.4
Lsat_1_v5_gn_5_136361 Lactuca sativa HOM05D006176 ORTHO05D007346 7.6e-06 54.3 102 33.3
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 1.0e-05 53.9 93 35.5


User provided reference genes

Program Settings