Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 2.0e-118 429.1 209 100.0
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 9.4e-89 330.5 174 93.7
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 8.3e-69 264.2 164 76.8
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 1.4e-68 263.5 164 76.8
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.9e-68 263.1 164 76.8
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 3.2e-68 262.3 164 77.4
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.7e-67 259.2 162 75.9
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 3.5e-67 258.8 164 76.2
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 6.0e-67 258.1 164 75.6
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 6.0e-67 258.1 164 76.2
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.7e-66 256.5 162 75.3
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 3.0e-66 255.8 163 73.0
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 5.0e-66 255.0 162 72.2
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 8.6e-66 254.2 161 73.9
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.5e-65 253.4 163 71.2
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.9e-65 253.1 162 72.2
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.5e-65 252.7 164 72.0
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 4.3e-65 251.9 162 72.2
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 5.6e-65 251.5 164 72.6
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 7.3e-65 251.1 162 71.0
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 7.3e-65 251.1 162 71.0
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 9.5e-65 250.8 158 77.2
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.6e-64 250.0 162 70.4
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 1.6e-64 250.0 164 72.0
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 1.6e-64 250.0 164 70.1
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.1e-64 249.6 163 71.8
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 2.1e-64 249.6 162 72.2
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 4.7e-64 248.4 164 72.0
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.8e-63 246.5 164 68.9
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 2.3e-63 246.1 164 71.3
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 3.1e-63 245.7 164 69.5
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 3.1e-63 245.7 160 75.0
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 4.0e-63 245.4 156 71.8
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 4.0e-63 245.4 160 71.2
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 5.2e-63 245.0 160 70.0
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 5.2e-63 245.0 164 71.3
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 5.2e-63 245.0 165 72.7
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 5.2e-63 245.0 162 70.4
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.2e-63 245.0 162 70.4
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 5.2e-63 245.0 180 68.3
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 6.8e-63 244.6 187 66.3
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 8.9e-63 244.2 155 71.0
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 8.9e-63 244.2 155 71.6
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.2e-62 243.8 163 68.7
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.2e-62 243.8 162 69.1
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.5e-62 243.4 163 71.2
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 2.6e-62 242.7 162 69.1
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.4e-62 242.3 162 69.1
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 3.4e-62 242.3 165 70.9
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 7.5e-62 241.1 159 67.9
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 7.5e-62 241.1 162 71.0
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 9.8e-62 240.7 164 70.7
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 9.8e-62 240.7 165 66.1
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 2.2e-61 239.6 160 70.0
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.9e-61 239.2 159 69.2
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 4.9e-61 238.4 167 65.3
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 4.9e-61 238.4 164 66.5
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 6.4e-61 238.0 164 65.9
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.1e-60 237.3 165 72.1
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.4e-60 236.1 146 75.3
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 3.2e-60 235.7 156 71.8
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 4.1e-60 235.3 157 70.7
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 4.1e-60 235.3 158 69.0
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 5.4e-60 235.0 165 71.5
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 5.4e-60 235.0 158 68.4
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 7.0e-60 234.6 158 69.6
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.2e-59 233.8 163 66.9
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.2e-59 233.8 158 68.4
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 6.0e-59 231.5 172 65.7
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 7.8e-59 231.1 158 69.6
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 7.8e-59 231.1 159 69.2
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.3e-58 230.3 161 66.5
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 2.3e-58 229.6 163 67.5
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 3.0e-58 229.2 165 68.5
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.1e-58 228.4 164 64.6
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 6.6e-58 228.0 160 68.1
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.5e-57 226.9 165 64.8
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.9e-57 226.5 166 65.1
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 5.6e-57 224.9 157 66.9
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 7.3e-57 224.6 164 64.0
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.2e-56 223.8 163 65.6
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 2.1e-56 223.0 160 66.2
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 8.9e-55 217.6 165 66.7
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.0e-54 216.5 164 65.9
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.3e-53 211.1 181 58.6
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.1e-52 210.7 181 58.0
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 9.2e-52 207.6 182 57.1
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 1.6e-51 206.8 163 58.9
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 7.8e-51 204.5 170 62.4
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.1e-49 200.7 170 61.2
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 5.6e-49 198.4 163 58.3
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 9.5e-49 197.6 121 73.6
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 3.6e-48 195.7 121 72.7
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 6.2e-48 194.9 106 89.6
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.4e-47 193.7 108 86.1
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.1e-44 184.1 163 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 4.6e-43 178.7 158 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 4.6e-43 178.7 158 55.1
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 1.7e-42 176.8 156 59.0
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 9.6e-41 171.0 143 58.7
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 4.4e-38 162.2 158 50.6
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 6.4e-37 158.3 160 48.8
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.4e-36 156.4 108 67.6
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 4.2e-36 155.6 173 49.7
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 2.1e-35 153.3 166 48.8
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 2.7e-35 152.9 108 65.7
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 3.5e-35 152.5 173 49.1
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 9.6e-33 144.4 108 62.0
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 2.8e-32 142.9 115 61.7
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 3.6e-32 142.5 144 56.2
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.4e-31 140.6 107 61.7
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 5.5e-20 102.1 160 40.0
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 7.1e-20 101.7 106 54.7
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 3.3e-17 92.8 69 68.1
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 3.3e-17 92.8 69 68.1
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 6.2e-16 88.6 63 65.1
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 1.2e-14 84.3 62 62.9
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.4e-12 77.4 46 87.0
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.3e-10 70.9 70 50.0
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 3.0e-10 69.7 47 68.1


User provided reference genes

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