Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 1.2e-49 199.5 97 100.0
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 6.0e-46 187.2 97 94.8
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 1.3e-40 169.5 104 82.7
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 3.8e-40 167.9 103 82.5
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 3.8e-40 167.9 100 86.0
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 4.9e-40 167.5 103 81.6
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.9e-40 167.5 103 81.6
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.9e-40 167.5 103 81.6
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 4.9e-40 167.5 100 85.0
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 1.4e-39 166.0 103 81.6
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.4e-39 166.0 103 82.5
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 1.4e-39 166.0 103 81.6
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.4e-39 166.0 104 80.8
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 1.9e-39 165.6 99 84.8
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 2.4e-39 165.2 101 81.2
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.4e-39 165.2 103 80.6
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 3.2e-39 164.9 103 80.6
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 3.2e-39 164.9 103 79.6
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 4.2e-39 164.5 101 80.2
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 5.4e-39 164.1 104 78.8
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 7.1e-39 163.7 102 80.4
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 9.3e-39 163.3 101 81.2
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 9.3e-39 163.3 100 82.0
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 9.3e-39 163.3 103 79.6
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 9.3e-39 163.3 103 79.6
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 9.3e-39 163.3 101 80.2
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 9.3e-39 163.3 102 81.4
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.2e-38 162.9 97 83.5
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.2e-38 162.9 104 77.9
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 1.6e-38 162.5 98 81.6
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 1.6e-38 162.5 101 79.2
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 1.6e-38 162.5 103 79.6
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 1.6e-38 162.5 103 78.6
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 1.6e-38 162.5 106 79.2
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 1.6e-38 162.5 101 79.2
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 2.7e-38 161.8 103 78.6
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 2.7e-38 161.8 103 78.6
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 3.5e-38 161.4 93 82.8
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 3.5e-38 161.4 99 79.8
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 4.6e-38 161.0 93 83.9
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 4.6e-38 161.0 103 79.6
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 4.6e-38 161.0 101 79.2
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 4.6e-38 161.0 101 79.2
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 4.6e-38 161.0 101 79.2
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 6.0e-38 160.6 103 78.6
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 6.0e-38 160.6 103 78.6
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 6.0e-38 160.6 103 78.6
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 7.8e-38 160.2 101 77.2
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 7.8e-38 160.2 99 80.8
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 7.8e-38 160.2 101 79.2
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.0e-37 159.8 105 78.1
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 1.0e-37 159.8 105 80.0
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.3e-37 159.5 102 79.4
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 1.3e-37 159.5 102 79.4
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 1.3e-37 159.5 99 81.8
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 1.7e-37 159.1 99 77.8
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 1.7e-37 159.1 103 76.7
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.7e-37 159.1 105 77.1
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 3.0e-37 158.3 107 74.8
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 3.0e-37 158.3 103 77.7
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 3.9e-37 157.9 103 76.7
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 3.9e-37 157.9 101 79.2
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 5.1e-37 157.5 104 76.0
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 6.6e-37 157.1 92 82.6
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 6.6e-37 157.1 91 84.6
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 6.6e-37 157.1 101 78.2
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 8.7e-37 156.8 103 75.7
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 8.7e-37 156.8 103 75.7
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 8.7e-37 156.8 105 76.2
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.1e-36 156.4 101 82.2
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.1e-36 156.4 101 82.2
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.1e-36 156.4 107 75.7
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 1.5e-36 156.0 100 78.0
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 4.3e-36 154.5 100 76.0
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 4.3e-36 154.5 82 89.0
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 5.6e-36 154.1 101 74.3
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 5.6e-36 154.1 100 78.0
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 5.6e-36 154.1 100 78.0
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 7.3e-36 153.7 88 83.0
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 9.6e-36 153.3 98 78.6
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 1.3e-35 152.9 99 76.8
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 1.6e-35 152.5 100 75.0
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 4.8e-35 151.0 85 81.2
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 6.2e-35 150.6 98 74.5
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 8.1e-35 150.2 85 84.7
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 8.1e-35 150.2 85 84.7
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 1.1e-34 149.8 101 74.3
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 1.4e-34 149.4 98 76.5
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 1.8e-34 149.1 101 73.3
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 5.3e-34 147.5 103 71.8
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 9.0e-34 146.7 103 71.8
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 2.6e-33 145.2 92 79.3
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 3.4e-33 144.8 104 70.2
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.4e-33 144.8 73 93.2
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 1.3e-32 142.9 95 75.8
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 1.7e-32 142.5 92 75.0
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 2.9e-32 141.7 89 79.8
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 3.8e-32 141.4 104 69.2
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 3.8e-32 141.4 103 70.9
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 4.9e-32 141.0 89 79.8
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 6.4e-32 140.6 97 71.1
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.1e-31 139.8 106 67.9
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.1e-31 139.8 106 67.9
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 3.2e-31 138.3 106 67.0
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 5.4e-31 137.5 106 66.0
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.4e-31 137.5 106 66.0
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 2.7e-30 135.2 73 86.3
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 1.8e-29 132.5 69 87.0
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.9e-28 129.0 74 77.0
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 5.6e-28 127.5 69 82.6
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 4.9e-24 114.4 77 70.1
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 8.4e-24 113.6 70 74.3
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 7.1e-23 110.5 83 60.2
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.6e-22 109.4 74 66.2
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 9.6e-20 100.1 81 55.6
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 2.4e-18 95.5 68 69.1
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 2.4e-18 95.5 68 69.1
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 4.0e-18 94.7 57 75.4
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 2.0e-17 92.4 70 57.1
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 5.8e-17 90.9 103 54.4
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.0e-16 90.1 65 58.5
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 1.3e-16 89.7 54 75.9
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 3.2e-15 85.1 94 54.3
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 5.5e-15 84.3 55 61.8
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 2.9e-08 62.0 67 46.3


User provided reference genes

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