Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.5e-178 629.4 319 100.0
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.7e-169 598.2 314 95.2
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.4e-160 569.7 345 85.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 2.6e-154 548.9 318 85.8
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.1e-133 480.3 315 73.7
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 3.2e-128 462.2 316 71.5
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 7.8e-127 457.6 321 70.7
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 2.3e-126 456.1 317 69.7
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.0e-126 455.7 313 71.6
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 5.1e-126 454.9 348 66.7
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 8.6e-126 454.1 318 70.8
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.1e-125 453.8 317 71.6
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 1.5e-125 453.4 320 72.2
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.3e-125 452.2 317 71.3
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 3.3e-125 452.2 314 70.7
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 9.6e-125 450.7 317 69.4
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 6.2e-124 448.0 315 70.2
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 8.1e-124 447.6 315 69.8
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 8.1e-124 447.6 317 71.0
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.1e-123 447.2 319 67.1
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.4e-123 446.8 316 69.6
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 5.2e-123 444.9 313 69.3
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-122 443.4 314 69.7
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.0e-122 443.0 314 69.7
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.6e-122 442.6 323 68.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.4e-122 441.8 314 69.7
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 5.8e-122 441.4 314 67.2
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.8e-122 441.4 314 69.7
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.8e-122 441.4 314 69.4
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 5.8e-122 441.4 325 67.7
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.6e-122 441.0 323 68.4
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.6e-122 441.0 314 69.7
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.3e-121 440.3 320 69.1
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 1.3e-121 440.3 315 69.5
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.7e-121 439.9 314 69.7
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 2.9e-121 439.1 314 68.8
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.8e-121 438.7 314 69.7
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.8e-121 438.7 315 69.5
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 8.4e-121 437.6 326 66.9
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 4.2e-120 435.3 318 67.9
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 7.1e-120 434.5 322 66.5
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 2.1e-119 433.0 319 66.1
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 4.6e-119 431.8 317 66.2
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 4.6e-119 431.8 312 66.7
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.3e-118 430.3 319 65.8
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.7e-118 429.9 316 67.1
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.7e-118 429.9 319 65.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.1e-118 428.3 314 68.2
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 6.6e-118 427.9 319 65.2
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 6.6e-118 427.9 316 67.7
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.9e-117 426.4 316 65.2
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.5e-117 426.0 325 65.2
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.5e-117 426.0 311 67.2
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.5e-117 426.0 324 65.7
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 3.3e-117 425.6 314 66.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 9.6e-117 424.1 327 64.8
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-116 423.3 325 64.9
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.8e-116 421.8 316 66.1
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 4.8e-116 421.8 317 63.7
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 6.2e-116 421.4 318 65.7
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 8.1e-116 421.0 321 66.0
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 8.1e-116 421.0 317 63.4
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.1e-115 420.6 312 65.4
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 3.1e-115 419.1 313 66.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 5.3e-115 418.3 321 65.1
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.2e-114 417.2 322 64.0
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.0e-114 416.4 314 65.0
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.3e-113 413.7 314 66.2
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.2e-113 412.9 318 64.5
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.9e-113 412.5 318 62.6
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.9e-113 412.5 315 64.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 3.2e-112 409.1 310 66.1
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.2e-112 408.7 318 62.9
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 4.2e-112 408.7 315 64.1
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 4.2e-112 408.7 328 62.2
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 5.4e-112 408.3 317 64.7
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 5.4e-112 408.3 315 63.8
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 9.3e-112 407.5 316 63.3
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.2e-111 407.1 314 62.7
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.3e-110 403.7 372 55.4
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 2.3e-110 402.9 318 64.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.0e-110 402.5 313 62.0
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 5.1e-110 401.7 318 63.5
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.5e-109 400.2 318 63.8
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.5e-109 399.4 319 63.6
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 3.3e-109 399.1 318 63.5
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 3.3e-109 399.1 308 65.3
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 3.6e-108 395.6 295 64.4
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.4e-107 392.9 330 61.2
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.4e-107 392.9 335 59.4
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 3.1e-107 392.5 312 62.5
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 2.0e-106 389.8 278 68.0
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 3.4e-106 389.0 315 59.7
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-105 386.3 260 72.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.8e-102 376.7 273 65.9
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.0e-102 375.9 283 64.7
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.5e-101 373.6 317 58.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.4e-98 362.5 279 64.5
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 4.5e-98 362.1 242 73.1
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-97 360.5 241 74.7
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-91 340.1 247 69.6
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.3e-89 334.0 239 66.9
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.1e-88 330.9 308 54.2
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.6e-87 327.0 230 65.7
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 5.1e-86 322.0 316 51.3
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 4.1e-83 312.4 238 66.8
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.4e-80 303.9 203 73.4
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.4e-78 297.4 332 49.1
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 6.7e-78 295.0 310 51.9
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.3e-77 292.7 231 61.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.4e-74 282.7 241 64.3
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.5e-72 275.4 238 61.3
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.9e-65 253.1 188 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 8.5e-65 251.5 302 44.0
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 8.2e-60 235.0 189 57.7
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 8.0e-55 218.4 182 63.2
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 5.0e-49 199.1 132 71.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 5.5e-48 195.7 324 39.8
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 4.7e-47 192.6 318 40.6
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 8.0e-39 165.2 320 36.6
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.3e-38 163.7 117 66.7
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-34 149.8 107 71.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.3e-33 147.9 125 56.8
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.5e-32 144.4 119 64.7
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.6e-32 142.5 111 63.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.6e-32 142.5 111 63.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.6e-32 142.5 111 63.1
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 1.1e-27 128.3 126 51.6
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.0e-27 125.6 94 61.7
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.3e-25 120.6 90 62.2
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 9.5e-24 115.2 84 72.6
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.6e-21 107.1 81 69.1
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 3.6e-15 86.7 75 54.7
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-12 77.8 52 61.5
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 3.7e-12 76.6 89 48.3
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-11 75.1 57 56.1
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-09 68.2 60 56.7
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-09 68.2 60 56.7


User provided reference genes

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