Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.0e-109 397.5 198 100.0
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 4.7e-106 387.9 198 97.5
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.4e-97 359.8 189 93.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.6e-96 355.5 197 88.3
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 4.4e-96 354.8 198 87.9
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.4e-89 333.2 196 81.1
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 6.8e-89 330.9 196 81.6
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.2e-88 330.1 198 79.3
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.2e-87 325.9 196 79.1
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 2.4e-86 322.4 197 78.2
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 3.2e-86 322.0 197 77.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.4e-86 321.2 197 78.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.9e-84 315.1 198 75.3
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.9e-84 315.1 198 75.3
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 5.1e-84 314.7 198 74.7
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 1.1e-83 313.5 197 74.6
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.5e-83 313.2 198 75.3
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 4.3e-83 311.6 198 72.7
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.3e-82 310.1 197 76.6
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 1.6e-82 309.7 197 75.6
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.1e-82 309.3 198 73.2
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 73.7
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.6e-82 308.5 198 75.8
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.2e-82 307.8 198 74.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.1e-81 307.0 198 73.2
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.4e-81 306.6 198 73.2
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.8e-81 306.2 198 71.7
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 74.7
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 73.2
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 4.0e-81 305.1 198 73.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 4.0e-81 305.1 196 73.0
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 4.0e-81 305.1 198 73.2
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 73.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 6.9e-81 304.3 198 72.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.6e-80 302.4 183 78.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 2.6e-80 302.4 198 71.2
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 74.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 4.4e-80 301.6 198 73.2
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 73.7
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 72.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.8e-80 301.2 195 71.8
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 71.7
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 7.6e-80 300.8 198 72.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 7.6e-80 300.8 196 73.0
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 71.2
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.7e-79 299.7 197 69.5
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 2.2e-79 299.3 197 70.1
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 3.8e-79 298.5 198 72.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 4.9e-79 298.1 198 71.7
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 4.9e-79 298.1 198 70.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 4.9e-79 298.1 198 72.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 8.4e-79 297.4 197 74.1
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 8.4e-79 297.4 197 70.6
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 8.4e-79 297.4 198 70.7
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 72.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.9e-78 296.2 197 72.6
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 2.4e-78 295.8 197 70.1
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 71.7
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 70.7
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 71.7
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 9.3e-78 293.9 196 70.4
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 71.7
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 69.2
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 4.6e-77 291.6 196 70.9
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.6e-77 291.6 198 71.2
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 6.0e-77 291.2 197 72.1
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 69.2
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 7.9e-77 290.8 196 70.9
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.0e-76 290.4 197 71.1
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 72.2
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.3e-76 290.0 198 70.2
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.3e-76 289.3 198 71.2
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 71.7
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 8.7e-76 287.3 198 70.2
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 66.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.1e-75 287.0 196 68.9
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.5e-75 286.6 197 70.6
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.5e-75 286.6 198 69.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.5e-75 286.6 198 69.7
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.9e-75 286.2 199 68.8
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 2.5e-75 285.8 197 69.5
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.5e-75 285.8 184 74.5
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 67.7
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 4.3e-75 285.0 198 70.2
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 7.3e-75 284.3 186 74.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 9.6e-75 283.9 196 68.9
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 67.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.6e-74 283.1 198 70.2
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.6e-74 283.1 184 73.9
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.6e-74 283.1 184 73.9
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.1e-74 282.7 183 74.3
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.8e-74 282.3 196 69.4
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.8e-74 282.3 198 67.2
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 2.8e-74 282.3 198 68.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 3.6e-74 282.0 198 70.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 4.8e-74 281.6 183 71.6
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 8.1e-74 280.8 198 70.2
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 8.1e-74 280.8 198 67.2
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 1.8e-73 279.6 186 74.7
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 5.3e-73 278.1 186 74.2
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 5.3e-73 278.1 198 68.2
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 6.9e-73 277.7 194 69.1
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.5e-72 276.6 197 65.5
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.5e-72 276.6 191 72.3
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 3.4e-72 275.4 196 69.9
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 9.9e-72 273.9 197 67.5
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 9.9e-72 273.9 199 67.3
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 2.2e-71 272.7 199 66.8
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 6.4e-71 271.2 198 64.6
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 1.1e-70 270.4 198 63.1
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 5.5e-70 268.1 187 68.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 4.6e-69 265.0 178 70.2
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 3.0e-68 262.3 196 64.8
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 1.5e-67 260.0 198 63.1
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-65 253.8 183 67.2
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.0e-63 247.3 198 60.1
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.3e-60 236.9 196 59.2
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 6.7e-60 234.6 187 56.7
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 5.7e-59 231.5 183 60.1
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 6.3e-58 228.0 170 66.5
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 8.2e-58 227.6 169 65.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 4.1e-57 225.3 144 73.6
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 6.9e-57 224.6 143 73.4
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 3.4e-56 222.2 155 69.0
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 2.9e-55 219.2 187 55.6
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 8.4e-55 217.6 144 67.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.1e-54 217.2 197 56.3
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 3.2e-54 215.7 144 66.0
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 4.2e-54 215.3 156 62.2
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 6.1e-53 211.5 192 53.6
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 4.5e-48 195.3 198 49.0
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 4.6e-45 185.3 198 53.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 2.3e-44 183.0 114 71.1
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 2.0e-43 179.9 124 69.4
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 3.7e-42 175.6 198 49.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 2.0e-40 169.9 98 78.6
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.7e-37 159.5 188 45.7
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 4.8e-34 148.7 188 48.9
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 5.9e-32 141.7 184 42.4
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.3e-23 114.0 68 75.0
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 3.8e-23 112.5 73 63.0
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 8.5e-23 111.3 194 40.7
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 5.5e-22 108.6 185 35.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.2e-21 107.5 106 49.1
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 3.0e-20 102.8 120 45.0
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.2e-19 100.9 122 45.9
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 4.8e-18 95.5 112 46.4
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.4e-17 93.2 70 58.6
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.4e-17 92.0 103 48.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.2e-15 86.7 62 71.0
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.1e-09 67.8 43 69.8
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 3.8e-07 59.3 35 80.0
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.8e-07 59.3 44 63.6


User provided reference genes

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