Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 2.7e-211 738.4 370 100.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 4.5e-203 711.1 370 96.5
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.1e-187 659.1 370 90.0
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 3.6e-184 648.3 372 87.6
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.9e-156 556.2 306 89.5
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 5.1e-146 521.5 370 67.6
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.3e-145 518.8 370 69.7
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 4.3e-145 518.5 370 68.6
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 8.2e-144 514.2 370 67.8
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.1e-143 513.8 370 67.8
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.1e-143 512.3 371 68.2
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.4e-142 508.8 370 66.8
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.3e-141 506.9 370 67.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 6.1e-139 498.0 370 65.4
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 2.3e-138 496.1 374 67.4
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.0e-138 495.7 371 65.5
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 7.4e-137 491.1 370 65.7
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.2e-136 489.6 372 65.1
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 4.8e-136 488.4 371 64.4
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 4.8e-136 488.4 370 65.9
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 6.3e-136 488.0 370 65.9
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 8.2e-136 487.6 370 66.2
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 8.2e-136 487.6 378 65.9
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.4e-135 486.9 370 65.1
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.1e-135 485.7 371 64.4
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.1e-135 485.3 371 63.9
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 4.1e-135 485.3 370 65.4
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.4e-134 482.3 375 64.5
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.0e-133 480.7 370 64.1
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.5e-133 477.6 370 62.7
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 8.5e-133 477.6 368 64.1
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.4e-132 476.9 371 64.2
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.2e-132 475.7 370 63.5
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.2e-132 474.6 370 61.9
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 9.4e-132 474.2 370 63.2
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.2e-131 473.8 371 65.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.1e-131 473.0 370 64.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.5e-129 466.8 370 62.4
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 3.3e-129 465.7 370 62.2
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 3.3e-129 465.7 370 63.2
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 5.7e-129 464.9 371 65.2
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.7e-128 462.2 369 62.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.1e-127 460.7 370 61.6
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 2.4e-127 459.5 370 60.8
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 3.1e-127 459.1 371 61.5
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 5.3e-127 458.4 370 61.4
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 9.1e-127 457.6 370 61.9
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 7.7e-126 454.5 362 63.0
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.2e-125 453.0 367 60.2
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.2e-125 453.0 367 60.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.4e-124 450.3 371 60.4
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.2e-123 447.2 370 59.7
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.6e-123 446.8 370 59.5
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.8e-122 443.4 374 61.5
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 1.8e-122 443.4 370 62.2
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.0e-122 442.6 370 59.5
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.3e-121 439.1 352 62.5
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 5.7e-121 438.3 352 64.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-120 437.2 375 60.3
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 3.7e-120 435.6 370 57.8
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 5.3e-119 431.8 376 57.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 9.1e-119 431.0 340 63.8
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.0e-118 429.9 355 61.7
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 4.5e-118 428.7 373 58.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 4.5e-118 428.7 347 63.7
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.3e-117 427.2 347 61.7
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.9e-117 426.0 413 53.5
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.8e-117 425.6 371 59.8
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 8.5e-117 424.5 373 58.4
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 8.5e-117 424.5 374 58.3
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.5e-116 423.7 374 59.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 4.2e-116 422.2 370 58.6
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 9.4e-116 421.0 380 60.0
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 2.1e-115 419.9 374 58.3
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.7e-115 419.5 329 64.1
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 6.1e-115 418.3 375 58.9
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.0e-114 417.5 374 58.3
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 2.3e-114 416.4 403 55.3
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 3.9e-114 415.6 374 58.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.0e-113 413.3 378 58.2
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.7e-113 411.8 371 57.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 9.7e-113 411.0 359 58.2
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.3e-112 410.6 376 58.2
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 1.3e-112 410.6 357 57.7
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.3e-112 408.3 321 63.9
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.1e-111 407.5 324 63.0
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 4.1e-111 405.6 375 56.8
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 7.0e-111 404.8 378 57.1
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 2.6e-110 402.9 378 56.9
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 2.6e-110 402.9 306 67.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.6e-110 402.9 387 55.3
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 3.5e-110 402.5 378 56.6
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 7.7e-110 401.4 378 56.6
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.8e-109 399.1 329 59.9
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 5.0e-109 398.7 375 56.0
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 8.5e-109 397.9 384 55.7
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.2e-108 396.0 379 56.2
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.6e-107 392.5 370 51.4
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.6e-107 392.5 370 51.4
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 6.1e-107 391.7 380 55.0
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 6.1e-107 391.7 356 58.1
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 8.0e-107 391.3 355 59.4
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.0e-106 391.0 379 55.4
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.0e-106 391.0 370 52.4
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.4e-103 379.8 370 55.4
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.4e-103 379.8 331 59.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.1e-103 379.4 370 50.8
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 5.4e-103 378.6 378 53.7
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 7.7e-102 374.8 354 55.9
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.7e-101 373.6 375 51.2
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.8e-101 372.5 394 49.5
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 6.5e-101 371.7 357 55.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 5.5e-100 368.6 323 58.2
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.7e-99 366.3 393 50.4
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 8.0e-99 364.8 371 53.1
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 8.0e-99 364.8 332 57.2
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 5.2e-98 362.1 346 53.2
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 5.7e-97 358.6 380 51.6
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.8e-96 356.3 367 53.1
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 5.4e-87 325.5 373 49.1
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 3.1e-82 309.7 383 46.0
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 8.3e-80 301.6 216 67.1
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.2e-79 299.7 301 53.8
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 7.8e-78 295.0 338 48.8
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 8.6e-77 291.6 404 42.1
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 4.7e-75 285.8 296 53.7
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.8e-74 283.9 273 56.0
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 5.8e-73 278.9 479 38.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 6.4e-72 275.4 287 53.0
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.9e-71 273.9 241 58.9
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.3e-69 266.9 259 54.8
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.3e-69 266.9 386 40.9
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 5.1e-69 265.8 391 39.9
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 5.8e-65 252.3 260 51.2
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.4e-58 231.1 241 52.7
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.4e-58 231.1 255 51.4
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.1e-58 229.9 225 54.2
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.2e-57 228.0 211 54.5
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 3.9e-53 213.0 347 36.6
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 3.1e-50 203.4 396 33.1
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.7e-48 197.6 204 52.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.6e-43 179.9 149 60.4
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.4e-42 177.2 115 67.8
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.8e-40 169.9 137 57.7
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 5.3e-26 122.9 431 25.1
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.6e-22 111.3 149 45.6
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.7e-22 110.5 72 70.8
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.3e-21 108.2 162 38.3
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.1e-18 96.7 120 45.0
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.5e-17 94.7 73 64.4
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-12 78.6 75 54.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.0e-12 77.8 42 81.0
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.2e-06 58.5 48 58.3
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 1.6e-06 58.2 41 70.7
Cre11.g467758 Chlamydomonas reinhardtii HOM05D057976 ORTHO05D044158 3.6e-06 57.0 47 55.3


User provided reference genes

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