Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 2.6e-170 602.1 327 100.0
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.4e-115 420.2 256 92.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.3e-105 386.3 254 84.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 5.2e-94 348.6 258 77.1
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.7e-92 343.6 254 77.6
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 7.1e-67 258.5 255 58.4
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 8.7e-65 251.5 255 57.6
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.6e-63 247.3 257 56.4
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.1e-63 246.9 257 58.4
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.8e-62 243.8 255 55.3
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.2e-61 241.1 258 58.1
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 2.6e-61 240.0 254 57.9
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 7.6e-61 238.4 256 56.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 7.6e-61 238.4 252 58.7
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.7e-60 237.3 260 53.1
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 8.4e-60 235.0 257 54.5
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 2.7e-58 229.9 254 56.3
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.7e-58 229.9 254 57.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.5e-58 229.6 256 53.1
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 6.1e-58 228.8 261 51.0
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 6.1e-58 228.8 256 55.1
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 5.1e-57 225.7 275 50.5
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 6.7e-57 225.3 252 55.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.7e-57 225.3 254 53.1
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.7e-57 224.9 260 51.2
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.1e-56 224.6 262 50.0
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.1e-56 224.6 258 50.4
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.1e-56 224.6 255 54.5
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.9e-56 223.8 254 52.8
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.9e-56 223.8 266 54.1
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 3.3e-56 223.0 276 52.9
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 5.7e-56 222.2 271 53.5
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 7.4e-56 221.9 270 51.9
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 7.4e-56 221.9 259 54.8
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.3e-55 221.1 245 57.1
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.6e-55 220.7 254 55.5
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.2e-55 220.3 262 53.4
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.2e-55 220.3 277 52.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.8e-55 219.9 253 55.3
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.8e-55 219.9 255 53.7
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.8e-55 219.2 262 52.7
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.4e-54 217.6 250 49.6
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 3.1e-54 216.5 273 52.7
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.2e-53 214.5 257 51.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.2e-53 214.5 257 51.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-53 214.2 257 48.6
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 2.0e-53 213.8 260 53.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.6e-53 213.4 265 50.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.5e-53 212.6 265 50.9
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 7.7e-53 211.8 265 53.6
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.7e-52 210.7 259 51.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.7e-52 210.7 316 46.8
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.2e-52 210.3 255 48.6
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.8e-52 209.5 254 50.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.8e-52 209.5 245 50.6
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.0e-52 209.1 261 51.0
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 6.5e-52 208.8 259 51.4
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.5e-52 208.4 255 48.2
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 8.5e-52 208.4 261 49.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.4e-51 207.6 257 48.2
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.4e-51 207.6 252 50.4
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.9e-51 207.2 257 55.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.5e-51 206.8 244 50.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 2.5e-51 206.8 243 53.5
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.5e-51 206.8 211 57.8
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.6e-50 204.1 283 48.1
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.6e-50 204.1 243 51.4
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 2.7e-50 203.4 273 48.4
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.6e-50 203.0 243 49.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 6.1e-50 202.2 240 52.1
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.1e-50 202.2 250 49.2
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 6.1e-50 202.2 256 47.3
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.3e-49 200.3 269 48.0
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.0e-49 199.9 248 50.8
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.9e-49 199.5 254 49.6
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 5.1e-49 199.1 248 50.4
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.1e-48 198.0 234 53.8
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.1e-48 198.0 266 46.2
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.3e-48 196.4 260 50.8
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 3.3e-48 196.4 247 49.0
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.3e-48 196.1 254 45.3
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.2e-47 193.7 209 52.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 4.8e-47 192.6 251 46.2
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.4e-46 191.0 176 57.4
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 3.1e-46 189.9 243 51.4
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.1e-46 189.9 202 61.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 6.9e-46 188.7 247 49.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 9.1e-46 188.3 261 49.0
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 2.6e-45 186.8 257 44.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.4e-45 186.4 260 46.9
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.3e-44 184.5 269 46.8
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.2e-44 183.7 257 45.9
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 5.0e-44 182.6 255 46.3
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 8.5e-44 181.8 270 46.7
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.9e-43 180.6 269 46.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 3.2e-43 179.9 268 47.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 4.2e-43 179.5 257 46.3
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 5.5e-43 179.1 251 46.6
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 5.5e-43 179.1 281 44.1
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 7.2e-43 178.7 247 47.4
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.6e-42 177.6 284 45.1
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 2.1e-42 177.2 259 46.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 6.1e-42 175.6 257 45.5
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 6.1e-42 175.6 251 45.8
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 7.9e-42 175.3 254 46.9
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 7.9e-42 175.3 185 51.4
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.0e-41 174.9 171 60.8
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.4e-41 174.5 262 47.7
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 5.1e-41 172.6 252 45.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.4e-40 169.5 242 47.9
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 9.7e-40 168.3 255 46.3
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.2e-39 167.2 272 43.4
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.8e-38 164.1 165 50.9
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 9.1e-38 161.8 260 43.8
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.7e-36 157.5 278 42.8
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.5e-35 153.7 277 40.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 2.5e-35 153.7 238 44.5
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.2e-35 153.3 157 52.2
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 7.2e-35 152.1 179 43.6
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 8.0e-34 148.7 262 41.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-33 147.9 372 35.5
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.0e-33 146.7 263 40.3
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-32 144.8 239 38.1
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 7.4e-32 142.1 137 55.5
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 8.2e-31 138.7 167 48.5
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.6e-29 133.7 143 53.8
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 5.9e-29 132.5 298 33.9
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 2.9e-28 130.2 141 52.5
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 3.4e-24 116.7 249 41.8
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-21 107.5 218 35.8
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.7e-20 104.4 147 45.6
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 4.2e-19 99.8 212 34.4
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.4e-19 98.6 67 68.7
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.1e-18 97.4 122 56.6
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.0e-17 95.1 153 41.8
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.4e-17 94.7 149 38.9
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.3e-17 94.0 130 53.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.3e-17 94.0 255 35.3
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.2e-16 91.7 250 28.0
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.8e-15 87.0 124 49.2
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.1e-14 85.1 185 33.0
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 2.0e-13 80.9 181 40.9
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 2.7e-13 80.5 195 30.8
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.9e-11 74.3 68 57.4
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-06 58.2 47 53.2
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-06 58.2 47 53.2


User provided reference genes

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