Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 2497.6 1264 100.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 2414.4 1264 96.4
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 2223.7 1262 89.3
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 2216.4 1265 89.9
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1827.8 1271 73.1
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1806.2 1255 73.0
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1799.3 1262 72.3
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1799.3 1256 73.3
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1797.3 1276 72.2
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1793.9 1255 72.4
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1788.1 1258 72.2
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1779.6 1266 71.2
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1772.3 1270 71.1
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1762.7 1255 71.4
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1761.5 1287 69.9
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1761.1 1270 70.9
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1757.3 1269 70.5
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1756.9 1253 71.7
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1756.5 1269 70.3
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1756.1 1269 70.4
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1745.3 1256 70.6
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1743.4 1256 71.5
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1733.4 1258 70.3
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1731.8 1265 70.1
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1725.7 1268 69.2
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1724.9 1275 68.2
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1720.7 1275 68.9
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1720.7 1261 69.7
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1719.5 1254 70.1
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1719.1 1276 67.9
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1267 68.5
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1714.5 1264 68.8
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1710.7 1271 68.3
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1268 68.1
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1265 68.2
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1701.8 1266 68.0
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1690.6 1257 68.8
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1689.1 1273 68.3
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1689.1 1323 66.6
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1687.2 1337 65.2
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1686.8 1276 67.4
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1686.0 1273 68.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1685.6 1293 66.9
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1679.8 1270 67.0
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1283 66.3
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1259 66.6
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1673.3 1266 66.9
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1659.8 1265 67.0
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1659.0 1278 67.8
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1657.5 1255 67.1
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1655.2 1256 66.7
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1655.2 1267 66.1
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1652.1 1255 66.6
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1652.1 1275 66.0
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1651.0 1253 67.2
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1259 67.2
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1648.3 1254 67.5
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1647.9 1256 65.9
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1645.6 1255 67.3
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1642.1 1254 66.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1641.3 1269 66.6
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1639.0 1264 66.2
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1638.6 1321 64.4
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1271 64.9
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1635.2 1253 66.6
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1635.2 1253 66.5
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1628.6 1278 65.1
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1624.4 1185 70.4
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1623.6 1330 63.6
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1614.7 1256 65.9
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1610.9 1269 65.0
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1276 64.7
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1597.4 1232 67.3
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1595.1 1333 62.3
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1594.3 1266 65.0
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1580.1 1182 67.3
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1579.3 1249 65.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1578.5 1252 64.9
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1256 64.9
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1256 64.9
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1546.2 1257 64.2
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1545.4 1193 67.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1537.7 1298 61.8
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1536.5 1267 63.1
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1535.0 1268 63.6
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1514.2 1195 64.6
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1496.1 1208 63.7
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1469.1 1024 72.3
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1458.0 1009 72.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1455.3 1275 59.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1446.0 1167 63.6
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1431.0 1253 59.3
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1429.1 1253 59.0
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1397.5 1262 57.5
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1382.1 1257 57.8
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1236.9 1041 61.9
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1168.7 889 66.5
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1165.6 1272 49.3
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1163.3 1268 50.1
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1161.4 1269 51.6
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1130.2 965 59.8
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1084.7 889 64.1
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1081.2 934 61.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.3e-294 1016.9 800 64.5
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 5.0e-294 1015.0 677 75.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.3e-291 1006.1 1230 45.9
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 3.4e-282 975.7 823 61.4
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.2e-268 930.6 1202 44.6
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 8.2e-220 768.5 1309 37.1
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 1.3e-212 744.6 549 69.2
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.9e-192 677.6 1416 34.5
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 5.7e-189 666.0 621 56.2
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 6.1e-183 646.0 593 55.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.0e-182 645.2 470 69.1
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 3.5e-178 630.2 1226 34.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 8.3e-172 609.0 493 64.5
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 5.1e-153 546.6 647 48.1
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.9e-129 467.2 326 70.6
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 2.8e-127 461.1 703 42.8
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 4.8e-127 460.3 1162 30.9
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 4.5e-117 427.2 276 76.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.8e-95 354.8 345 55.9
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 7.0e-94 350.1 231 76.6
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.8e-86 325.5 230 73.0
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.5e-84 317.0 267 60.3
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.5e-84 317.0 267 60.3
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.1e-74 283.9 237 61.2
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 2.0e-72 278.9 200 69.0
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 7.0e-54 217.2 180 64.4
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 9.5e-51 206.8 176 64.2
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 9.9e-48 196.8 162 64.2
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.7e-47 194.9 157 62.4
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.6e-40 170.6 104 76.0
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 4.9e-39 167.9 1207 22.0
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.5e-35 156.4 127 65.4
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.5e-32 146.4 109 72.5
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.9e-30 139.4 120 62.5
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 5.3e-25 121.3 225 37.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.0e-20 107.1 137 43.1
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 3.0e-20 105.5 115 44.3
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.9e-19 102.8 115 42.6
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.3e-19 102.1 158 41.8
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 8.1e-18 97.4 95 52.6
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 6.9e-17 94.4 62 75.8
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 9.0e-17 94.0 165 33.9
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 9.9e-16 90.5 125 47.2
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.4e-14 86.7 65 70.8
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 1.6e-13 83.2 66 57.6
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.6e-13 83.2 108 42.6
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.9e-11 76.3 122 44.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 5.6e-11 74.7 249 25.3
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 3.7e-10 72.0 47 72.3
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 3.1e-09 68.9 41 78.0
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.2e-08 67.0 79 48.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.5e-06 59.3 157 33.8
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 4.2e-06 58.5 94 36.2
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 9.3e-06 57.4 63 54.0


User provided reference genes

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