Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 7.5e-183 643.7 312 100.0
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 8.1e-177 623.6 312 96.2
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 1.3e-155 553.1 339 81.1
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.1e-153 545.8 310 84.2
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 3.3e-130 468.8 314 73.9
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 8.2e-129 464.2 297 74.7
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 6.9e-128 461.1 316 71.2
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 9.0e-128 460.7 314 70.1
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.2e-127 460.3 318 72.6
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 1.5e-127 459.9 309 71.5
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 2.6e-127 459.1 312 69.2
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.6e-127 457.6 311 71.7
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.1e-125 453.8 312 71.5
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 1.4e-125 453.4 311 71.1
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 1.4e-125 453.4 313 69.3
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 1.9e-125 453.0 307 70.7
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 7.9e-124 447.6 313 69.0
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.8e-123 446.4 282 73.8
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 2.3e-123 446.0 288 71.9
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.0e-123 445.7 319 69.3
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 3.9e-123 445.3 312 67.9
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 1.1e-122 443.7 316 68.7
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 3.3e-122 442.2 308 68.8
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 5.7e-122 441.4 282 73.4
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 5.7e-122 441.4 297 71.4
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.4e-122 441.0 329 67.2
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 9.7e-122 440.7 282 73.4
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.1e-120 437.2 295 70.8
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 1.4e-120 436.8 312 67.0
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 1.8e-120 436.4 278 74.8
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 3.1e-120 435.6 311 68.2
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.2e-119 433.7 337 62.6
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.2e-119 433.7 335 63.0
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 2.0e-119 433.0 294 68.7
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 3.4e-119 432.2 312 68.6
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 3.4e-119 432.2 295 68.8
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 2.2e-118 429.5 335 64.2
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.2e-118 429.5 326 63.8
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 6.5e-118 427.9 295 68.5
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 1.1e-117 427.2 317 66.9
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 2.5e-117 426.0 295 68.1
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 3.2e-117 425.6 295 67.5
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 3.2e-117 425.6 313 67.1
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 4.2e-117 425.2 328 63.1
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 7.2e-117 424.5 318 66.4
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 7.2e-117 424.5 309 66.7
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 2.1e-116 422.9 295 67.5
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 2.7e-116 422.5 299 65.9
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 3.6e-116 422.2 319 66.1
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 4.6e-116 421.8 298 68.5
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 3.0e-115 419.1 298 68.8
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 3.0e-115 419.1 320 65.6
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 3.0e-115 419.1 319 64.9
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 3.0e-115 419.1 278 70.1
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 3.9e-115 418.7 320 65.9
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 5.1e-115 418.3 278 70.1
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 8.8e-115 417.5 319 64.9
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 8.8e-115 417.5 319 64.9
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 8.8e-115 417.5 287 68.6
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 3.3e-114 415.6 291 69.1
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 4.4e-114 415.2 275 70.9
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 7.4e-114 414.5 291 69.8
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 1.7e-113 413.3 285 68.8
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 2.8e-113 412.5 285 69.1
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 3.7e-113 412.1 324 64.5
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 6.3e-113 411.4 288 69.1
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 6.3e-113 411.4 315 64.1
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 8.2e-113 411.0 275 69.5
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 8.2e-113 411.0 398 54.5
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 1.5e-111 406.8 303 67.3
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 7.7e-111 404.4 323 61.0
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 6.5e-110 401.4 308 63.6
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 8.5e-110 401.0 350 59.4
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.1e-109 400.6 296 64.9
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 4.2e-109 398.7 306 65.4
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 6.1e-108 394.8 277 68.6
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 9.1e-104 380.9 304 60.2
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 1.6e-103 380.2 299 62.9
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.2e-101 372.5 307 63.8
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 4.5e-95 352.1 300 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 6.5e-94 348.2 321 54.8
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 6.5e-94 348.2 250 67.6
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 9.4e-93 344.4 350 53.7
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 3.6e-92 342.4 291 59.5
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 4.7e-92 342.0 302 55.0
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 2.8e-84 316.2 310 51.9
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 2.6e-82 309.7 252 63.1
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 3.3e-77 292.7 211 68.2
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 2.1e-76 290.0 165 80.0
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 3.6e-76 289.3 166 80.1
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 2.0e-74 283.5 175 76.0
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 4.9e-73 278.9 196 70.4
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 1.8e-72 276.9 193 69.9
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 4.1e-72 275.8 182 70.9
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 2.6e-66 256.5 280 45.4
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 7.0e-64 248.4 182 62.6
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.6e-63 247.3 273 50.2
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 6.0e-63 245.4 287 41.8
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 3.3e-61 239.6 292 43.8
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 6.0e-55 218.8 147 73.5
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 8.6e-54 214.9 164 63.4
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 3.2e-48 196.4 120 74.2
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 3.2e-32 143.3 89 69.7
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 1.9e-29 134.0 326 31.3
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.6e-28 131.0 282 33.3
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.1e-27 128.3 82 70.7
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 4.9e-25 119.4 337 26.7
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.9e-24 117.5 94 61.7
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 4.2e-24 116.3 60 78.3
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 7.4e-21 105.5 108 50.9
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 6.2e-20 102.4 158 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 1.1e-11 75.1 237 23.6
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 2.0e-10 70.9 131 33.6
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-08 64.7 68 41.2
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 2.1e-07 60.8 358 22.1


User provided reference genes

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