Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 5.5e-278 960.3 474 100.0
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 8.0e-261 903.3 457 97.8
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 4.0e-252 874.4 457 93.7
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 1.5e-238 829.3 457 88.8
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 1.6e-208 729.6 457 75.7
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 5.6e-206 721.1 457 74.2
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 5.3e-204 714.5 457 74.6
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 4.5e-203 711.4 457 75.7
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 2.1e-200 702.6 457 72.9
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 1.8e-199 699.5 458 72.7
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 3.0e-199 698.7 457 72.9
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 3.0e-199 698.7 457 72.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 1.1e-198 696.8 457 72.4
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.1e-198 696.8 457 73.1
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.9e-198 696.0 457 72.2
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 1.1e-196 690.3 456 71.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.4e-196 689.9 456 72.1
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 5.3e-196 688.0 456 72.6
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.5e-195 686.4 457 72.4
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 1.3e-194 683.3 456 71.7
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 2.9e-194 682.2 470 69.1
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 1.2e-192 676.8 458 71.4
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 2.1e-192 676.0 470 68.9
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 3.5e-192 675.2 457 70.0
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.5e-192 675.2 471 69.2
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.0e-191 673.7 454 71.8
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 1.8e-191 672.9 457 70.0
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 2.3e-191 672.5 457 71.1
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 5.1e-191 671.4 455 70.5
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 1.1e-190 670.2 458 71.6
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 1.1e-190 670.2 456 70.8
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 8.2e-189 664.1 471 66.9
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 2.4e-188 662.5 458 71.0
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.1e-188 662.1 472 67.8
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.1e-188 662.1 472 67.8
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.1e-188 662.1 472 67.8
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 9.0e-188 660.6 433 72.7
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.6e-187 657.5 472 68.0
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 1.7e-186 656.4 458 68.6
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 2.9e-186 655.6 471 66.5
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 6.5e-186 654.4 458 68.3
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 6.5e-186 654.4 458 69.2
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 6.5e-186 654.4 458 69.4
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 6.5e-186 654.4 457 68.7
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 1.9e-185 652.9 507 65.9
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 2.5e-185 652.5 459 68.2
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 2.5e-185 652.5 454 68.5
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 3.2e-185 652.1 458 67.9
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 3.2e-185 652.1 458 67.9
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 7.2e-185 651.0 458 67.5
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 9.3e-185 650.6 437 72.5
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 2.7e-184 649.0 458 67.9
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 2.7e-184 649.0 454 69.8
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 4.6e-184 648.3 507 65.3
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 4.6e-184 648.3 458 69.0
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 7.9e-184 647.5 457 67.8
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 3.0e-183 645.6 446 69.1
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 5.7e-182 641.3 459 68.0
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 3.4e-179 632.1 460 66.7
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 5.9e-179 631.3 440 67.5
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 1.3e-178 630.2 489 63.0
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.3e-178 630.2 457 67.0
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 6.5e-178 627.9 458 66.4
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 1.2e-176 623.6 458 65.9
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 1.8e-175 619.8 457 65.0
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 3.0e-175 619.0 457 65.2
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 5.1e-175 618.2 457 64.3
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 8.2e-173 610.9 482 65.4
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 1.8e-172 609.8 400 75.8
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 6.5e-170 601.3 410 69.0
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 2.5e-169 599.4 441 64.2
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 3.6e-168 595.5 456 61.2
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.0e-167 594.0 487 60.0
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 1.8e-167 593.2 574 55.4
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 2.6e-166 589.3 393 70.5
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 3.3e-166 589.0 441 64.2
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 4.4e-166 588.6 433 64.9
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.7e-166 588.2 430 67.0
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 1.7e-162 576.6 469 61.8
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 2.5e-161 572.8 496 58.9
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 6.1e-160 568.2 431 66.8
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 8.0e-160 567.8 471 60.5
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 1.1e-156 557.4 458 60.5
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 2.4e-156 556.2 395 66.8
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 3.1e-156 555.8 456 56.8
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 3.5e-155 552.4 378 70.1
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 1.1e-148 530.8 475 57.7
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 3.2e-145 519.2 401 60.8
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 2.0e-139 500.0 459 55.6
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 4.0e-135 485.7 457 51.0
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 7.0e-132 474.9 471 51.6
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 7.8e-131 471.5 457 52.1
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 1.1e-129 467.6 667 42.1
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 2.3e-127 459.9 458 53.9
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.4e-124 450.7 432 52.8
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 1.9e-124 450.3 296 73.3
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 5.0e-122 442.2 495 51.7
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 8.1e-120 434.9 296 72.6
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 4.0e-119 432.6 363 62.0
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.4e-116 424.1 458 50.4
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 5.4e-116 422.2 311 67.5
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 8.1e-112 408.3 365 58.4
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.5e-102 377.5 950 30.4
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 1.1e-87 328.2 251 65.3
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 1.5e-86 324.3 382 49.7
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 7.6e-86 322.0 448 44.0
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 3.8e-69 266.5 519 36.0
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.2e-64 250.8 176 70.5
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 6.9e-63 245.7 255 55.3
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 2.1e-59 234.2 182 59.9
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 2.7e-59 233.8 462 35.7
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 6.1e-59 232.6 161 69.6
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.4e-49 199.1 163 61.3
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 2.2e-48 197.6 160 63.8
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 3.1e-39 167.2 109 68.8
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 6.3e-32 142.9 149 47.0
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 2.6e-25 120.9 83 72.3
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 1.7e-24 118.2 80 76.2
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.2e-19 102.1 66 77.3
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.1e-15 87.0 100 48.0
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 9.2e-15 85.9 79 46.8
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 2.1e-11 74.7 60 58.3
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 4.0e-10 70.5 50 66.0
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 2.6e-09 67.8 33 84.8
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.4e-07 62.0 264 22.7
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.4e-07 61.2 230 24.3
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 3.2e-07 60.8 32 78.1
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 4.1e-07 60.5 160 25.6
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.1e-06 58.2 247 23.1
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.1e-06 58.2 247 23.1


User provided reference genes

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