Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.2e-110 403.3 210 100.0
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.0e-103 380.2 210 94.8
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 4.1e-92 341.7 190 93.7
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.1e-60 237.3 211 62.6
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 2.7e-59 232.6 211 62.6
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.6e-56 223.4 212 59.0
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.8e-56 222.6 209 60.3
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.1e-55 220.7 210 59.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.4e-55 220.3 212 60.4
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.4e-55 220.3 212 60.4
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 4.0e-55 218.8 221 56.6
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 5.3e-55 218.4 210 59.0
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.4e-54 215.7 216 57.9
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 4.4e-54 215.3 209 59.3
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 5.8e-54 214.9 209 59.3
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 7.6e-54 214.5 212 59.4
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.3e-53 213.8 214 57.9
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.2e-53 213.0 213 55.4
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.9e-52 209.9 209 56.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 3.5e-51 205.7 153 71.2
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 3.9e-50 202.2 197 56.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.1e-49 200.7 212 51.9
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.5e-49 200.3 211 53.6
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.5e-49 200.3 212 57.5
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 5.6e-49 198.4 227 52.9
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.8e-47 193.4 208 53.8
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.8e-47 193.4 199 55.8
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 6.9e-47 191.4 207 55.1
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.5e-46 190.3 189 58.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 2.0e-46 189.9 208 52.4
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.4e-46 189.1 222 50.5
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 3.4e-46 189.1 204 54.9
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 4.5e-46 188.7 234 51.3
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.9e-46 187.6 205 51.2
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-45 186.8 223 50.2
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.2e-45 186.4 211 52.1
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.2e-43 180.6 139 68.3
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 2.1e-43 179.9 133 72.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 7.9e-43 177.9 277 44.0
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 3.9e-42 175.6 161 58.4
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 5.1e-42 175.3 292 40.4
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 6.7e-42 174.9 159 64.8
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.1e-41 174.1 154 62.3
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.9e-41 173.3 168 57.7
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.5e-41 172.9 198 54.0
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 3.3e-41 172.6 204 51.5
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 4.3e-41 172.2 157 58.6
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 5.6e-41 171.8 164 59.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 7.4e-41 171.4 157 60.5
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 9.6e-41 171.0 140 65.0
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 6.2e-40 168.3 173 54.9
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.1e-39 167.5 209 47.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 2.4e-39 166.4 145 59.3
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.1e-39 166.0 199 51.8
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 4.0e-39 165.6 161 55.3
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.9e-39 164.9 210 49.0
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.2e-38 164.1 177 52.5
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.5e-38 163.7 156 59.6
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 3.4e-38 162.5 163 58.3
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 2.2e-37 159.8 228 44.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.9e-37 159.5 158 58.2
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 3.8e-37 159.1 158 56.3
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 3.2e-36 156.0 194 50.0
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.2e-36 156.0 136 61.0
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.2e-35 154.1 167 53.3
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.5e-35 152.5 201 46.8
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 2.3e-34 149.8 129 60.5
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 5.1e-34 148.7 158 52.5
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 4.3e-33 145.6 147 58.5
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 3.7e-32 142.5 97 74.2
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.1e-31 141.0 128 54.7
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.1e-31 141.0 177 44.6
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.4e-31 140.6 141 58.2
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.1e-31 139.4 162 48.1
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.4e-30 136.0 206 40.8
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 5.8e-30 135.2 142 50.7
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.8e-29 132.5 212 40.6
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 1.1e-28 131.0 170 45.9
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.5e-27 125.9 215 40.0
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.6e-24 117.1 133 52.6
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.0e-23 111.3 175 36.0
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 1.5e-22 110.5 160 40.0
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.9e-21 106.3 178 36.0
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 8.5e-21 104.8 145 38.6
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 1.1e-20 104.4 86 67.4
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.9e-20 103.6 175 34.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.2e-20 102.4 126 40.5
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 4.2e-20 102.4 126 40.5
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 5.5e-20 102.1 188 35.1
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 9.4e-20 101.3 143 36.4
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.2e-19 100.9 123 39.0
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.1e-19 100.1 176 30.7
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.1e-19 100.1 126 39.7
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.6e-19 99.4 125 42.4
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 4.6e-19 99.0 204 29.4
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 6.1e-19 98.6 122 37.7
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 6.1e-19 98.6 186 31.7
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 6.1e-19 98.6 154 34.4
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 7.9e-19 98.2 126 38.9
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.0e-18 97.8 146 35.6
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.0e-18 97.8 176 30.1
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 1.4e-18 97.4 164 36.6
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.4e-18 97.4 193 31.1
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.8e-18 97.1 161 36.0
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.8e-18 97.1 195 31.8
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.8e-18 97.1 169 34.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.8e-18 97.1 161 37.9
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 2.3e-18 96.7 163 33.7
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.3e-18 96.7 164 32.9
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.3e-18 96.7 180 33.3
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.0e-18 96.3 204 28.4
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.0e-18 96.3 126 38.1
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.9e-18 95.9 156 35.3
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 6.7e-18 95.1 163 31.3
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 6.7e-18 95.1 72 66.7
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 8.8e-18 94.7 181 36.5
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 8.8e-18 94.7 209 31.1
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 8.8e-18 94.7 156 34.6
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 8.8e-18 94.7 156 34.6
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.1e-17 94.4 123 47.2
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 2.0e-17 93.6 143 34.3
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.0e-17 93.6 161 33.5
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.5e-17 93.2 126 36.5
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.3e-17 92.8 123 46.3
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 3.3e-17 92.8 202 30.7
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.3e-17 92.8 192 33.3
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.3e-17 92.4 131 47.3
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 9.7e-17 91.3 167 33.5
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.7e-16 90.5 123 39.0
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.2e-16 90.1 182 32.4
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.7e-16 89.4 152 37.5
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 3.7e-16 89.4 124 40.3
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 4.8e-16 89.0 127 33.9
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 4.8e-16 89.0 154 33.1
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 6.3e-16 88.6 167 30.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 8.2e-16 88.2 158 31.6
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.4e-15 87.4 126 41.3
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.4e-15 87.4 125 35.2
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.8e-15 87.0 156 30.8
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.4e-15 86.7 140 35.0
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 3.1e-15 86.3 116 34.5
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 3.1e-15 86.3 184 31.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 3.1e-15 86.3 200 27.5
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 4.1e-15 85.9 115 37.4
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.1e-15 85.9 213 28.2
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 9.1e-15 84.7 198 28.3
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 4.5e-14 82.4 182 32.4
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 1.0e-13 81.3 133 42.1
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.0e-13 81.3 189 31.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 3.8e-13 79.3 104 38.5
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.0e-13 79.0 92 42.4
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.0e-13 79.0 92 42.4
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 5.0e-13 79.0 40 97.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 8.5e-13 78.2 91 39.6
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.9e-12 77.0 86 40.7
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.2e-12 76.3 68 63.2
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 5.1e-10 68.9 151 32.5
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.0e-09 67.0 243 25.9
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 3.3e-09 66.2 165 29.1
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.3e-08 64.3 83 48.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.7e-08 63.9 154 31.2
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.8e-08 63.2 77 39.0
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-07 60.5 127 30.7
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 7.0e-07 58.5 158 25.3


User provided reference genes

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