Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.1e-94 349.0 172 100.0
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 1.2e-89 333.2 172 94.8
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 1.2e-84 316.6 172 90.7
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 1.0e-80 303.5 172 86.0
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.5e-79 299.7 172 87.2
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 2.3e-69 265.8 150 82.7
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 1.7e-67 259.6 150 80.7
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.4e-66 256.5 148 79.7
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 5.4e-66 254.6 155 78.1
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 5.4e-66 254.6 147 80.3
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 7.1e-66 254.2 147 80.3
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 7.1e-66 254.2 149 79.2
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 9.2e-66 253.8 157 74.5
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.6e-65 253.1 142 81.0
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 1.6e-65 253.1 139 82.7
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 2.7e-65 252.3 150 80.7
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 3.5e-65 251.9 142 82.4
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 4.6e-65 251.5 148 79.1
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 6.0e-65 251.1 147 79.6
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 7.8e-65 250.8 157 73.9
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 7.8e-65 250.8 157 73.9
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 1.0e-64 250.4 137 82.5
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.0e-64 250.4 139 82.0
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 2.3e-64 249.2 145 80.0
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 3.0e-64 248.8 142 79.6
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 3.9e-64 248.4 148 75.0
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 3.9e-64 248.4 158 73.4
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 3.9e-64 248.4 160 76.2
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 3.9e-64 248.4 136 81.6
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 5.1e-64 248.1 139 80.6
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 5.1e-64 248.1 147 77.6
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 5.1e-64 248.1 163 70.6
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 6.6e-64 247.7 158 72.8
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.6e-64 247.7 164 73.8
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 6.6e-64 247.7 163 68.1
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 6.6e-64 247.7 136 81.6
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 8.6e-64 247.3 145 76.6
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 8.6e-64 247.3 145 76.6
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 8.6e-64 247.3 137 78.8
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 8.6e-64 247.3 145 76.6
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 8.6e-64 247.3 145 76.6
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 8.6e-64 247.3 155 74.8
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 8.6e-64 247.3 150 74.7
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.1e-63 246.9 153 74.5
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 1.1e-63 246.9 155 73.5
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.5e-63 246.5 159 71.1
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.5e-63 246.5 152 75.0
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.5e-63 246.5 152 75.0
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.9e-63 246.1 161 71.4
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.9e-63 246.1 146 78.1
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 2.5e-63 245.7 147 76.9
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 3.3e-63 245.4 147 75.5
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 3.3e-63 245.4 153 75.2
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 4.3e-63 245.0 159 70.4
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 5.6e-63 244.6 165 71.5
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 5.6e-63 244.6 149 76.5
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 7.3e-63 244.2 148 74.3
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 7.3e-63 244.2 155 72.9
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 7.3e-63 244.2 147 75.5
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 9.6e-63 243.8 148 73.6
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 9.6e-63 243.8 155 72.9
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.2e-62 243.4 137 81.8
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 1.2e-62 243.4 147 76.2
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 1.6e-62 243.0 135 80.7
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.8e-62 242.3 139 78.4
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 2.8e-62 242.3 137 80.3
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 6.2e-62 241.1 161 73.3
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 6.2e-62 241.1 155 74.2
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 6.2e-62 241.1 155 74.2
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 6.2e-62 241.1 155 74.2
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 8.1e-62 240.7 133 80.5
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.4e-61 240.0 158 72.8
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 1.8e-61 239.6 163 67.5
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 2.4e-61 239.2 157 72.0
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 2.4e-61 239.2 156 69.9
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 4.0e-61 238.4 165 69.1
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 5.2e-61 238.0 148 72.3
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.2e-61 238.0 139 78.4
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 1.2e-60 236.9 156 71.8
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 1.5e-60 236.5 137 75.9
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 1.5e-60 236.5 137 75.9
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.5e-60 236.5 150 74.0
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 1.5e-60 236.5 152 71.1
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.0e-60 236.1 137 75.9
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 4.4e-60 235.0 137 74.5
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 4.4e-60 235.0 137 76.6
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 5.8e-60 234.6 155 67.1
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 5.8e-60 234.6 155 67.1
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 5.8e-60 234.6 137 74.5
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 9.9e-60 233.8 152 72.4
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 1.7e-59 233.0 153 71.2
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.7e-59 233.0 137 76.6
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 2.2e-59 232.6 134 76.9
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 3.8e-59 231.9 155 67.1
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 4.9e-59 231.5 135 75.6
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 4.9e-59 231.5 135 75.6
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 6.4e-59 231.1 137 74.5
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 6.4e-59 231.1 153 70.6
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 3.2e-58 228.8 135 75.6
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 1.2e-57 226.9 165 64.8
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 2.7e-57 225.7 173 62.4
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 1.0e-56 223.8 148 68.2
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 8.7e-56 220.7 150 66.7
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 1.1e-55 220.3 133 72.9
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 1.5e-55 219.9 147 68.0
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 1.9e-55 219.5 151 66.2
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.3e-54 216.9 205 55.6
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.8e-54 215.7 203 56.2
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.6e-54 215.3 191 57.6
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 3.1e-53 212.2 127 72.4
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 9.0e-53 210.7 131 71.0
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 1.1e-50 203.8 132 72.7
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 2.7e-49 199.1 147 67.3
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 1.5e-44 183.3 135 60.0
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 2.0e-44 183.0 145 61.4
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 7.6e-44 181.0 128 61.7
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 9.9e-44 180.6 97 83.5
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 7.1e-42 174.5 99 77.8
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 2.7e-33 146.0 83 79.5
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.7e-24 114.8 72 73.6
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-22 109.4 83 59.0
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.6e-17 93.6 131 38.9
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 6.7e-16 88.2 86 52.3
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 9.1e-13 77.8 141 31.9
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 8.2e-06 54.7 32 68.8


User provided reference genes

Program Settings