Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 6.0e-194 680.6 335 100.0
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 7.1e-187 657.1 335 96.7
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 9.6e-152 540.4 335 82.4
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 2.1e-138 496.1 342 77.8
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 2.1e-130 469.5 316 71.8
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 6.3e-127 458.0 312 70.5
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 5.5e-123 444.9 331 66.8
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.7e-122 442.6 312 67.6
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 3.9e-121 438.7 310 69.0
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.2e-121 438.3 312 66.7
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 6.7e-121 438.0 311 69.1
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 3.7e-119 432.2 327 66.7
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 8.2e-119 431.0 331 65.6
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.1e-118 430.6 332 65.4
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.1e-118 430.6 332 65.7
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.8e-118 429.9 332 65.7
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 1.8e-118 429.9 319 67.7
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 9.1e-118 427.6 332 64.8
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 1.6e-117 426.8 318 67.3
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 2.6e-117 426.0 332 65.4
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 4.5e-117 425.2 310 65.8
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 4.5e-117 425.2 310 65.8
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.7e-117 424.5 332 64.5
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.7e-116 423.3 312 64.1
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 1.7e-116 423.3 306 67.0
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 2.2e-116 422.9 313 65.8
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 3.8e-116 422.2 314 64.3
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 5.5e-115 418.3 274 69.7
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 1.4e-113 413.7 273 69.2
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.3e-113 412.9 321 64.5
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 4.0e-113 412.1 312 62.8
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 1.5e-112 410.2 276 69.6
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 1.5e-112 410.2 311 63.3
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 4.4e-112 408.7 325 63.7
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 5.7e-112 408.3 317 61.5
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 5.7e-112 408.3 312 63.5
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.8e-111 406.0 273 66.7
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 8.2e-111 404.4 313 62.6
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 8.2e-111 404.4 314 64.0
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.4e-110 403.7 312 61.5
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.4e-110 403.7 272 67.6
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.8e-110 403.3 273 68.1
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 5.3e-110 401.7 316 63.0
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 1.2e-109 400.6 334 58.1
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 2.7e-109 399.4 288 67.4
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 3.5e-109 399.1 312 60.9
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 4.5e-109 398.7 270 66.7
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 5.9e-109 398.3 304 60.2
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 1.3e-108 397.1 323 60.1
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 3.8e-108 395.6 304 60.5
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 3.8e-108 395.6 323 59.8
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 6.5e-108 394.8 312 62.8
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 8.5e-108 394.4 307 59.0
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 2.5e-107 392.9 335 57.9
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.2e-107 392.5 304 59.5
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 4.2e-107 392.1 323 59.8
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 5.5e-107 391.7 312 60.6
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 7.2e-107 391.3 313 59.7
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.6e-106 390.2 283 66.1
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 2.1e-106 389.8 305 60.0
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 6.1e-106 388.3 314 59.2
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 6.1e-106 388.3 312 60.6
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 8.0e-106 387.9 308 60.4
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 4.0e-105 385.6 336 56.0
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 8.8e-105 384.4 337 57.9
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.2e-104 384.0 275 63.3
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.0e-104 383.3 304 57.9
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 4.4e-104 382.1 330 57.9
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 1.1e-102 377.5 312 59.9
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 5.4e-102 375.2 270 62.6
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 1.7e-100 370.2 263 65.8
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.2e-98 364.0 292 60.3
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 1.6e-98 363.6 321 57.6
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 4.7e-98 362.1 273 58.6
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 6.1e-98 361.7 277 59.6
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 2.3e-97 359.8 270 64.1
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 6.8e-97 358.2 252 65.5
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 2.6e-96 356.3 302 59.6
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 5.7e-96 355.1 343 52.5
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 1.1e-94 350.9 290 59.3
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 5.4e-94 348.6 313 55.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.2e-93 347.4 307 55.7
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 2.7e-93 346.3 315 55.9
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 2.5e-91 339.7 317 53.6
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 2.3e-89 333.2 342 50.9
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.3e-89 333.2 303 54.1
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 2.0e-88 330.1 310 51.6
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 1.2e-85 320.9 304 52.6
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 3.5e-85 319.3 239 64.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.5e-83 313.9 280 55.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 7.3e-83 311.6 288 54.5
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 7.3e-83 311.6 241 58.5
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 1.4e-78 297.4 213 63.4
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 7.8e-77 291.6 351 45.0
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 4.3e-75 285.8 327 46.5
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 7.3e-75 285.0 254 55.5
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 7.3e-75 285.0 273 52.4
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 1.6e-74 283.9 190 71.6
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.3e-73 280.0 287 50.2
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 5.2e-73 278.9 189 71.4
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 3.7e-71 272.7 287 49.5
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 5.4e-70 268.9 190 68.9
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 1.8e-65 253.8 179 67.6
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 2.0e-64 250.4 285 43.5
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 2.9e-63 246.5 246 47.6
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 3.2e-62 243.0 314 43.0
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 5.1e-60 235.7 313 41.9
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 8.7e-60 235.0 192 60.9
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.1e-59 234.6 190 61.1
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 1.6e-58 230.7 278 44.2
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 5.8e-56 222.2 280 43.2
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 8.4e-55 218.4 199 54.3
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 1.1e-51 208.0 206 54.4
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.4e-49 201.1 191 53.9
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 9.0e-49 198.4 278 38.8
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 3.4e-48 196.4 336 34.2
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.7e-47 194.1 192 52.1
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 2.9e-47 193.4 129 72.1
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 6.4e-47 192.2 327 33.6
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.9e-46 190.7 270 40.0
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.3e-44 183.7 117 72.6
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.4e-41 173.7 134 61.9
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 3.4e-40 169.9 172 50.6
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.2e-39 167.2 168 53.0
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 9.3e-38 161.8 218 41.3
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 1.6e-37 161.0 256 36.3
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 2.3e-36 157.1 119 63.9
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 5.6e-35 152.5 119 60.5
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.6e-34 151.0 123 59.3
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 1.8e-33 147.5 119 56.3
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 5.5e-30 136.0 106 60.4
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 3.5e-29 133.3 132 52.3
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 5.1e-28 129.4 108 59.3
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 1.2e-24 118.2 169 40.2
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.9e-24 115.9 105 54.3
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.3e-18 98.2 97 46.4
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.8e-17 94.4 64 70.3
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 1.5e-16 91.3 73 61.6
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.0e-15 88.6 64 60.9
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 1.4e-14 84.7 60 65.0
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 1.6e-13 81.3 59 57.6
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 4.7e-13 79.7 65 61.5
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 1.4e-12 78.2 182 34.1
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 6.3e-10 69.3 72 47.2
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 8.2e-10 68.9 112 33.0
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 1.0e-07 62.0 52 51.9
Lj1g0015259 Lotus japonicus HOM05D000590 ORTHO05D006825 5.5e-06 56.2 36 66.7


User provided reference genes

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