Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.5e-175 618.6 305 100.0
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 8.1e-174 613.6 305 98.7
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.5e-171 604.0 305 97.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.5e-170 602.1 305 96.4
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.5e-169 598.2 305 95.7
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.0e-169 597.4 305 95.4
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.3e-168 596.3 305 96.1
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 7.2e-154 547.4 305 88.2
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.0e-151 539.3 305 85.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 84.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 86.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 84.6
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 83.9
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 85.2
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 85.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.2
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 84.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 83.9
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 85.2
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 85.2
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 83.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 83.0
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 84.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 85.2
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.1e-146 523.5 305 83.9
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.1e-146 523.5 304 83.9
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 82.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 82.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.3
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 84.6
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 82.3
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 83.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 4.2e-146 521.5 307 82.7
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 84.3
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 83.9
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 83.0
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 83.6
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 83.9
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 82.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 82.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 81.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 83.3
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 83.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 84.6
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 82.6
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.6
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 83.3
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 81.6
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.8e-144 516.2 302 82.1
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 83.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 83.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 81.6
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 83.6
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 83.0
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 82.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 81.6
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 5.7e-143 511.1 301 84.1
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 81.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 80.0
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 82.0
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 82.6
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 82.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 81.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 81.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 2.2e-142 509.2 301 83.4
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.8e-142 508.8 330 76.1
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.8e-142 508.8 305 82.3
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 82.3
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 6.3e-142 507.7 305 82.0
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 82.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 80.7
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.3e-141 504.6 305 80.3
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 7.0e-141 504.2 305 80.3
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 9.1e-141 503.8 308 81.2
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.2e-140 503.4 305 79.3
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.6e-140 502.3 305 80.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 4.5e-140 501.5 305 80.7
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.7e-139 499.6 302 81.1
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.5e-138 495.7 303 79.2
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 9.4e-138 493.8 300 80.0
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.6e-137 493.0 326 76.1
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.0e-136 490.3 372 68.8
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.4e-136 490.0 303 78.9
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 6.7e-136 487.6 305 78.0
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 8.8e-136 487.3 307 78.2
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.5e-135 486.5 307 77.2
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.3e-134 483.4 305 78.0
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.7e-134 483.0 305 77.4
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.8e-133 479.6 307 75.9
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.8e-133 479.6 305 75.7
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 5.3e-133 478.0 305 76.4
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 9.1e-133 477.2 305 76.1
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.6e-132 476.5 304 76.6
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.7e-131 473.0 306 75.2
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.7e-131 473.0 306 75.2
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.7e-131 473.0 306 75.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.7e-131 473.0 307 74.9
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 6.5e-131 471.1 306 75.2
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.5e-130 469.9 303 75.9
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 3.2e-130 468.8 307 74.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 3.2e-130 468.8 307 74.3
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 5.2e-128 461.5 305 75.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 3.4e-127 458.8 304 73.7
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 5.7e-127 458.0 304 73.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 5.7e-127 458.0 304 73.4
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.3e-126 456.8 388 61.9
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 4.1e-125 451.8 304 72.4
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.3e-118 430.3 304 68.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.2e-118 429.5 306 68.0
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.0e-116 422.9 304 67.1
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.7e-115 419.9 300 68.7
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.2e-113 413.7 305 69.8
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 3.6e-113 412.1 235 85.1
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 2.3e-107 392.9 303 63.0
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 3.9e-107 392.1 302 63.6
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.6e-103 379.4 261 74.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 5.4e-101 371.7 225 80.9
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.6e-97 360.1 309 59.5
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.4e-95 352.4 225 79.6
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.3e-88 329.7 226 74.8
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 3.4e-87 325.9 209 75.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 7.1e-69 265.0 143 89.5
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.2e-68 264.2 160 80.0
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 4.3e-66 255.8 301 53.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 5.6e-66 255.4 181 71.3
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.8e-64 250.4 149 78.5
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 9.0e-56 221.5 153 71.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.2e-55 221.1 154 71.4
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.7e-38 164.1 83 86.7
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.5e-37 160.2 125 64.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 9.4e-37 158.3 89 79.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 9.4e-37 158.3 136 55.9
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.1e-36 157.1 79 87.3
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 3.6e-36 156.4 80 85.0
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 3.6e-36 156.4 299 34.4
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.9e-36 155.2 103 72.8
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.3e-33 147.9 306 35.9
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.8e-32 144.1 205 44.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 8.0e-28 128.6 97 68.0
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 1.3e-25 121.3 76 72.4
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.2e-23 114.8 58 87.9
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.9e-21 107.5 60 81.7
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.6e-20 104.4 60 83.3
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 9.1e-16 88.6 295 28.5
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.8e-14 83.2 74 66.2
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 6.8e-11 72.4 243 30.0


User provided reference genes

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