Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 1.8e-136 489.2 243 100.0
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 2.1e-100 369.4 190 95.8
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 3.5e-87 325.5 189 83.6
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 5.8e-82 308.1 166 91.6
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 1.5e-69 266.9 190 68.9
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 5.7e-69 265.0 191 67.5
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 5.7e-69 265.0 187 66.8
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 7.4e-69 264.6 187 69.5
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 6.3e-68 261.5 189 67.7
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 1.4e-67 260.4 182 70.3
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.4e-67 260.4 189 67.2
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 1.8e-67 260.0 189 67.7
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 5.3e-67 258.5 195 66.2
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 6.9e-67 258.1 188 67.6
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 9.0e-67 257.7 189 66.7
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 1.2e-66 257.3 187 67.9
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 2.0e-66 256.5 187 67.4
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 1.0e-65 254.2 185 66.5
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 1.7e-65 253.4 184 66.3
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.7e-65 253.4 187 67.9
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 8.5e-65 251.1 186 66.1
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.9e-64 250.0 188 67.0
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 2.5e-64 249.6 187 66.3
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 3.2e-64 249.2 183 65.0
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 4.2e-64 248.8 188 67.0
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 9.4e-64 247.7 188 66.5
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 9.4e-64 247.7 186 65.1
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 2.1e-63 246.5 190 64.2
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 2.7e-63 246.1 182 63.7
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 2.7e-63 246.1 187 63.6
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 4.6e-63 245.4 191 64.9
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 6.1e-63 245.0 190 64.2
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 1.0e-62 244.2 188 66.0
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 1.8e-62 243.4 185 64.3
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 1.8e-62 243.4 187 65.2
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 5.1e-62 241.9 183 64.5
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 6.7e-62 241.5 187 64.2
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 8.8e-62 241.1 189 61.9
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.1e-61 240.7 185 64.9
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 1.1e-61 240.7 190 61.6
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 1.1e-61 240.7 187 64.2
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 7.4e-61 238.0 166 68.7
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 9.7e-61 237.7 181 62.4
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 9.7e-61 237.7 199 61.8
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 9.7e-61 237.7 187 62.6
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 4.8e-60 235.3 182 63.7
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 6.3e-60 235.0 179 67.0
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 6.3e-60 235.0 187 63.1
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 8.2e-60 234.6 188 62.2
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 1.4e-59 233.8 188 64.4
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 1.4e-59 233.8 188 64.4
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 1.4e-59 233.8 188 64.4
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 1.8e-59 233.4 181 63.0
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 4.1e-59 232.3 179 62.6
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 5.3e-59 231.9 176 64.8
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 5.3e-59 231.9 186 61.8
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 9.1e-59 231.1 189 59.3
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 1.5e-58 230.3 189 60.8
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 2.0e-58 229.9 166 65.7
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 2.0e-58 229.9 186 61.3
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 7.7e-58 228.0 189 61.9
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.0e-57 227.6 185 61.6
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 1.3e-57 227.3 167 67.1
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.3e-57 227.3 188 61.7
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 1.7e-57 226.9 190 62.1
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 1.7e-57 226.9 188 62.8
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.7e-57 226.9 186 60.2
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 1.7e-57 226.9 163 62.6
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 3.8e-57 225.7 188 61.7
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 3.8e-57 225.7 186 61.3
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 5.0e-57 225.3 186 60.8
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 5.0e-57 225.3 192 60.4
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 8.5e-57 224.6 173 66.5
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 3.2e-56 222.6 187 59.9
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 5.5e-56 221.9 189 60.3
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 2.1e-55 219.9 148 69.6
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 1.0e-54 217.6 170 62.9
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 1.4e-54 217.2 183 59.6
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.8e-54 216.9 166 61.4
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 2.3e-54 216.5 195 56.9
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 3.0e-54 216.1 167 61.1
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 6.7e-54 214.9 173 63.6
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 4.4e-53 212.2 290 43.4
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 3.7e-52 209.1 179 58.7
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 4.8e-52 208.8 195 56.4
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 8.2e-52 208.0 185 54.6
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 5.3e-51 205.3 191 54.5
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 2.6e-50 203.0 173 56.6
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.9e-50 201.8 162 59.3
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 7.7e-50 201.4 162 59.3
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.7e-49 200.3 144 63.9
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 2.7e-47 193.0 152 59.2
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 3.0e-46 189.5 173 55.5
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 6.7e-46 188.3 189 54.0
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 8.8e-46 188.0 173 54.9
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 4.4e-45 185.7 129 72.1
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 4.1e-43 179.1 128 70.3
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 5.3e-43 178.7 202 44.6
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 6.1e-39 165.2 155 60.6
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 2.6e-37 159.8 167 46.1
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 9.7e-37 157.9 120 55.0
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 4.8e-36 155.6 142 52.1
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 4.5e-34 149.1 92 75.0
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 8.5e-33 144.8 95 69.5
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 2.5e-32 143.3 118 55.1
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.6e-31 140.6 127 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 1.0e-25 121.3 131 47.3
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 1.4e-22 110.9 80 61.2
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 8.9e-22 108.2 107 44.9
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 5.9e-18 95.5 175 36.0
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 3.9e-17 92.8 123 43.9
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 5.6e-16 89.0 142 36.6
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 1.9e-11 73.9 65 63.1
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 2.0e-10 70.5 52 53.8
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 3.1e-06 56.6 125 24.8
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 3.1e-06 56.6 203 24.1


User provided reference genes

Program Settings