Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 4.9e-130 468.4 355 100.0
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 4.5e-107 392.1 355 82.8
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 1.6e-67 260.8 376 66.8
Sed0022884 Sechium edule HOM05D007706 ORTHO05D009593 1.2e-30 138.3 209 53.1
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 1.8e-23 114.4 313 39.3
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.5e-22 111.3 301 36.5
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.5e-22 111.3 281 35.9
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 2.0e-22 110.9 295 40.3
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 2.9e-21 107.1 291 41.6
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 1.2e-19 101.7 290 36.2
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.6e-19 101.3 297 35.4
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.6e-19 101.3 287 33.4
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 2.1e-19 100.9 315 36.5
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 2.1e-19 100.9 284 39.1
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.1e-19 100.9 284 39.1
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 3.5e-19 100.1 300 36.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 6.0e-19 99.4 288 40.3
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 7.9e-19 99.0 305 37.4
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.0e-18 98.6 279 39.8
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.0e-18 97.1 297 33.7
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 3.0e-18 97.1 305 34.8
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 6.6e-18 95.9 299 35.8
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 6.6e-18 95.9 294 34.4
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 6.6e-18 95.9 295 33.9
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 8.7e-18 95.5 281 34.9
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 8.7e-18 95.5 309 37.9
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.1e-17 95.1 291 38.1
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.1e-17 95.1 284 33.8
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 1.9e-17 94.4 313 37.1
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 2.5e-17 94.0 308 35.1
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.5e-17 94.0 293 35.8
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.3e-17 93.6 275 39.6
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 4.3e-17 93.2 288 35.8
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 4.3e-17 93.2 309 40.5
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 4.3e-17 93.2 280 35.4
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 5.6e-17 92.8 311 40.2
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 9.6e-17 92.0 304 33.2
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 9.6e-17 92.0 305 35.7
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.3e-16 91.7 290 31.0
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.3e-16 91.7 285 34.4
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 1.3e-16 91.7 288 35.1
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 2.1e-16 90.9 282 38.3
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 3.6e-16 90.1 298 36.6
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 8.1e-16 89.0 284 35.2
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 8.1e-16 89.0 292 37.0
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 1.1e-15 88.6 283 37.5
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.4e-15 88.2 244 34.8
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.4e-15 88.2 229 35.4
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 1.4e-15 88.2 299 34.4
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 1.4e-15 88.2 284 37.3
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 2.4e-15 87.4 297 33.7
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 3.1e-15 87.0 295 36.6
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 3.1e-15 87.0 295 31.2
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 6.9e-15 85.9 282 33.7
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 6.9e-15 85.9 293 31.1
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 1.2e-14 85.1 290 33.1
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 1.2e-14 85.1 277 33.6
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 2.0e-14 84.3 295 36.6
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 2.6e-14 84.0 287 33.8
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 2.6e-14 84.0 290 32.1
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 2.6e-14 84.0 294 36.1
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 3.4e-14 83.6 285 35.1
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 3.4e-14 83.6 283 30.0
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 7.6e-14 82.4 291 30.9
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 7.6e-14 82.4 279 33.3
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 9.9e-14 82.0 300 36.3
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 1.7e-13 81.3 281 36.7
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 1.7e-13 81.3 288 33.3
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 2.2e-13 80.9 304 33.9
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 6.4e-13 79.3 308 36.4
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 6.4e-13 79.3 283 35.3
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 3.2e-12 77.0 306 38.9
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 3.2e-12 77.0 280 29.6
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.2e-11 75.1 283 35.3
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 1.3e-10 71.6 268 28.7
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.3e-10 71.6 291 31.3
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.3e-09 66.6 112 38.4
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 4.3e-09 66.6 288 32.6
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 4.3e-09 66.6 297 30.3
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 4.3e-09 66.6 198 30.8
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.3e-08 65.1 291 29.2
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 1.1e-07 62.0 302 25.2
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 1.4e-07 61.6 108 42.6
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 2.4e-07 60.8 48 56.2
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 3.1e-07 60.5 302 30.5
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 1.2e-06 58.5 286 32.5
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.2e-06 58.5 235 27.2
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 3.4e-06 57.0 286 30.1
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.5e-06 56.6 80 45.0
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 7.6e-06 55.8 292 28.8
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 1.0e-05 55.5 325 29.2
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 1.0e-05 55.5 40 70.0
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.0e-05 55.5 40 67.5


User provided reference genes

Program Settings