Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022324.2 Cucumis melo HOM05D011029 ORTHO05D011115 3.5e-203 711.4 367 100.0
CsaV3_6G008110 Cucumis sativus L. HOM05D011029 ORTHO05D011115 7.9e-123 444.5 323 75.9
ClCG06G002050 Citrullus lanatus HOM05D002105 ORTHO05D011115 1.4e-100 370.5 311 68.5
Sed0016612 Sechium edule HOM05D002105 ORTHO05D011115 7.4e-89 331.6 311 61.1
CsaV3_6G008100 Cucumis sativus L. HOM05D002105 ORTHO05D001271 1.2e-73 281.2 351 51.0
MELO3C022325.2 Cucumis melo HOM05D002105 ORTHO05D011115 1.5e-65 254.2 385 45.2
CsaV3_6G008120 Cucumis sativus L. HOM05D002105 ORTHO05D001271 4.3e-52 209.5 331 44.7
MELO3C022323.2 Cucumis melo HOM05D002105 ORTHO05D001271 6.8e-42 175.6 318 41.5
Potri.013G130500 Populus trichocarpa HOM05D011029 ORTHO05D011115 1.9e-23 114.4 212 35.4
Sabra13G0108300 Salix brachista HOM05D000001 ORTHO05D000424 6.0e-22 109.4 215 35.3
PGR042G3221 Punica granatum HOM05D002105 ORTHO05D001271 1.3e-21 108.2 218 33.9
Sabra13G0109800 Salix brachista HOM05D000001 ORTHO05D011115 5.1e-21 106.3 175 37.1
ClCG03G006560 Citrullus lanatus HOM05D011029 ORTHO05D011115 1.6e-19 101.3 163 39.3
Haze_13182 Corylus avellana HOM05D002105 ORTHO05D001271 3.6e-19 100.1 384 27.1
MELO3C035705.2 Cucumis melo HOM05D011029 ORTHO05D011115 1.1e-18 98.6 192 34.9
Gohir.A02G018501 Gossypium hirsutum HOM05D011029 ORTHO05D011115 1.4e-18 98.2 267 31.1
Haze_13183 Corylus avellana HOM05D011029 ORTHO05D011115 3.1e-18 97.1 215 33.5
COL.COLO4_07399 Corchorus olitorius HOM05D011029 ORTHO05D011115 4.0e-18 96.7 206 33.0
PGR042G0540 Punica granatum HOM05D002105 ORTHO05D001271 1.5e-17 94.7 315 28.6
TWI73G0817 Tripterygium wilfordii HOM05D011029 ORTHO05D011115 1.5e-17 94.7 209 30.1
PGR042G3749 Punica granatum HOM05D002105 ORTHO05D001271 3.4e-17 93.6 321 29.0
Thecc.04G193900 Theobroma cacao HOM05D011029 ORTHO05D011115 3.4e-17 93.6 285 31.2
Gohir.D02G021900 Gossypium hirsutum HOM05D011029 ORTHO05D011115 3.8e-16 90.1 272 29.8
Gorai.005G027400 Gossypium raimondii HOM05D011029 ORTHO05D011115 1.4e-15 88.2 285 29.5
Prupe.1G409200 Prunus persica HOM05D012314 ORTHO05D013875 7.1e-15 85.9 292 29.5
Atru.chr6.2981 Acer truncatum HOM05D002105 ORTHO05D001271 3.0e-13 80.5 329 27.7
FAN20G0580 Fragaria x ananassa HOM05D000786 ORTHO05D013875 3.0e-13 80.5 132 32.6
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.1e-13 79.7 174 29.9
COL.COLO4_05441 Corchorus olitorius HOM05D011029 ORTHO05D011115 2.5e-12 77.4 189 31.2
FAN27G0041 Fragaria x ananassa HOM05D000786 ORTHO05D013875 3.3e-12 77.0 166 28.3
arahy.Tifrunner.gnm1.ann1.425CWT Arachis hypogaea HOM05D002105 ORTHO05D001271 7.4e-12 75.9 211 28.9
arahy.Tifrunner.gnm1.ann1.JI498E Arachis hypogaea HOM05D002105 ORTHO05D001271 7.4e-12 75.9 354 26.3
FvH4_2g31590 Fragaria vesca HOM05D012314 ORTHO05D013875 1.6e-11 74.7 124 33.9
FAN24G2222 Fragaria x ananassa HOM05D012314 ORTHO05D013875 2.1e-11 74.3 124 33.9
FvH4_2g31540 Fragaria vesca HOM05D012314 ORTHO05D013875 3.7e-11 73.6 90 43.3
Cpa.g.sc83.45 Carica papaya HOM05D011029 ORTHO05D011115 9.0e-10 68.9 221 27.6
CsaV3_1G036790 Cucumis sativus L. HOM05D011029 ORTHO05D011115 2.6e-09 67.4 100 38.0
A08p33750 Brassica napus HOM05D000178 ORTHO05D011115 3.4e-09 67.0 210 26.7
BraA08t35291Z Brassica rapa HOM05D000178 ORTHO05D011115 3.4e-09 67.0 210 26.7
arahy.Tifrunner.gnm1.ann1.9ER5KX Arachis hypogaea HOM05D000961 ORTHO05D001271 9.9e-09 65.5 226 26.1
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.3e-08 65.1 146 30.8
GSVIVG01020845001 Vitis vinifera HOM05D002105 ORTHO05D013875 1.3e-08 65.1 166 29.5
FvH4_2g31591 Fragaria vesca HOM05D012314 ORTHO05D013875 2.2e-08 64.3 128 31.2
BolC8t49038H Brassica oleracea HOM05D000178 ORTHO05D011115 2.9e-08 63.9 211 27.0
CDE08G0095 Ceratophyllum demersum HOM05D002105 ORTHO05D001271 3.8e-08 63.5 178 26.4
Eucgr.D01610 Eucalyptus grandis HOM05D011029 ORTHO05D011115 3.8e-08 63.5 101 31.7
Glyma.13G296001 Glycine max HOM05D002105 ORTHO05D001271 4.9e-08 63.2 219 26.9
BcaC07g38596 Brassica carinata HOM05D014980 ORTHO05D011115 6.4e-08 62.8 211 26.5
CARHR151850 Cardamine hirsuta HOM05D014980 ORTHO05D011115 8.4e-08 62.4 214 24.3
BcaC05g24969 Brassica carinata HOM05D000178 ORTHO05D011115 1.1e-07 62.0 202 24.3
BolC8t49039H Brassica oleracea HOM05D014980 ORTHO05D011115 1.4e-07 61.6 204 27.9
C05p09240 Brassica napus HOM05D014980 ORTHO05D011115 2.4e-07 60.8 194 26.3
Medtr2g090555 Medicago truncatula HOM05D002105 ORTHO05D001271 2.4e-07 60.8 153 29.4
C08p14020 Brassica napus HOM05D000178 ORTHO05D011115 5.5e-07 59.7 211 26.5
Gohir.D01G049800 Gossypium hirsutum HOM05D002105 ORTHO05D001271 5.5e-07 59.7 359 21.2
Gorai.002G069700 Gossypium raimondii HOM05D002105 ORTHO05D001271 5.5e-07 59.7 359 21.2
Gorai.009G386800 Gossypium raimondii HOM05D002105 ORTHO05D001271 5.5e-07 59.7 345 22.0
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 7.1e-07 59.3 210 24.8
BraA06t23967Z Brassica rapa HOM05D000178 ORTHO05D000229 2.1e-06 57.8 236 24.2
COL.COLO4_07397 Corchorus olitorius HOM05D011029 ORTHO05D011115 2.7e-06 57.4 114 36.0
Glyma.01G098300 Glycine max HOM05D018758 ORTHO05D019776 2.7e-06 57.4 237 23.2
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 4.6e-06 56.6 183 25.7
Medtr2g090525 Medicago truncatula HOM05D002105 ORTHO05D001271 6.0e-06 56.2 135 30.4


User provided reference genes

Program Settings