Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 1.9e-186 655.6 318 100.0
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 8.5e-158 560.5 306 90.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 6.8e-131 471.1 282 82.3
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.6e-111 406.8 298 68.5
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 1.7e-81 307.0 279 55.2
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 2.9e-81 306.2 278 54.0
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 9.3e-80 301.2 278 54.3
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 9.3e-80 301.2 290 50.3
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 1.6e-79 300.4 287 52.6
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 6.0e-79 298.5 285 51.2
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 1.3e-78 297.4 277 53.4
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 2.3e-78 296.6 281 50.9
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 5.1e-78 295.4 293 50.2
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 2.5e-77 293.1 287 51.6
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 5.7e-77 292.0 274 52.6
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 7.4e-77 291.6 272 52.2
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 9.7e-77 291.2 287 48.8
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 9.7e-77 291.2 272 52.2
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 8.2e-76 288.1 279 50.9
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 1.4e-75 287.3 272 51.8
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 2.4e-75 286.6 287 49.8
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 5.3e-75 285.4 287 49.5
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 9.0e-75 284.6 294 49.0
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 3.4e-74 282.7 272 51.8
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.3e-73 280.8 276 52.2
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 1.3e-73 280.8 294 49.3
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 2.2e-73 280.0 288 51.4
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.5e-73 278.5 276 51.8
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.4e-72 277.3 275 52.4
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 1.9e-72 276.9 278 50.4
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.2e-72 275.8 288 50.0
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.2e-72 275.8 288 50.0
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 5.5e-72 275.4 278 47.8
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 6.1e-71 271.9 277 49.8
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 7.9e-71 271.6 288 49.0
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 1.8e-70 270.4 276 48.9
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.1e-69 267.7 287 49.5
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 2.5e-69 266.5 280 48.2
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 4.3e-69 265.8 283 48.1
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 1.7e-68 263.8 279 46.6
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 8.2e-68 261.5 283 48.1
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.1e-67 259.6 195 63.1
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 5.3e-67 258.8 281 49.5
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 6.9e-67 258.5 280 49.6
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 6.9e-67 258.5 281 48.8
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.2e-66 257.7 195 62.6
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 1.5e-66 257.3 283 47.3
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 2.6e-66 256.5 280 49.3
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 3.8e-65 252.7 273 49.5
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 3.6e-63 246.1 278 46.0
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 7.9e-63 245.0 281 47.0
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.0e-62 244.6 281 45.9
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.0e-62 244.6 278 48.2
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 2.3e-62 243.4 283 44.5
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 5.1e-62 242.3 195 59.5
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.1e-61 241.1 285 44.2
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 3.3e-61 239.6 244 50.0
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.4e-61 239.2 275 44.4
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 5.7e-61 238.8 246 48.4
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 7.4e-61 238.4 272 47.4
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 1.7e-60 237.3 208 55.8
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 2.2e-60 236.9 292 45.2
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 4.8e-60 235.7 287 44.3
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 6.3e-60 235.3 284 43.7
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 2.6e-58 229.9 281 44.1
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.2e-57 226.9 279 45.2
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 6.5e-57 225.3 175 60.0
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.1e-56 224.6 175 60.0
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.1e-56 224.6 175 60.0
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 1.0e-54 218.0 269 43.5
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 3.0e-54 216.5 262 43.9
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 5.2e-54 215.7 342 39.2
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.1e-53 214.5 196 52.0
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 2.2e-52 210.3 281 42.3
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 8.2e-52 208.4 204 54.4
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 4.2e-48 196.1 311 38.9
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 7.2e-48 195.3 280 40.4
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 3.0e-46 189.9 177 53.1
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 9.7e-45 184.9 240 45.0
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.7e-44 184.1 132 68.9
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.8e-35 154.1 133 52.6
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.8e-14 84.3 177 30.5
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 4.7e-07 59.7 76 50.0


User provided reference genes

Program Settings