Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022287.2 Cucumis melo HOM05D004595 ORTHO05D005800 6.1e-310 1066.6 527 100.0
CsaV3_6G008680 Cucumis sativus L. HOM05D004595 ORTHO05D005800 2.9e-251 871.7 496 88.1
ClCG06G002450 Citrullus lanatus HOM05D004595 ORTHO05D005800 8.1e-222 773.9 540 73.3
Sed0025323 Sechium edule HOM05D004595 ORTHO05D005800 8.3e-166 587.8 517 63.1
Dinv44053 Davidia involucrata HOM05D004595 ORTHO05D005800 6.8e-35 152.9 523 30.6
RcHm_v2.0_Chr1g0348071 Rosa chinensis HOM05D004595 ORTHO05D005800 3.9e-30 137.1 507 29.8
FAN06G0382 Fragaria x ananassa HOM05D004595 ORTHO05D005800 8.1e-28 129.4 490 27.3
FAN06G4364 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.3e-27 127.9 490 27.3
QL04p029927 Quercus lobata HOM05D004595 ORTHO05D005800 1.2e-26 125.6 511 27.8
FAN10G2859 Fragaria x ananassa HOM05D004595 ORTHO05D005800 3.4e-26 124.0 490 28.0
FAN10G2341 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.4e-26 123.6 490 26.9
FAN03G1267 Fragaria x ananassa HOM05D004595 ORTHO05D005800 1.3e-25 122.1 488 27.9
MD07G1109800 Malus domestica HOM05D004595 ORTHO05D005800 6.4e-25 119.8 516 27.9
TAR375G0350 Trochodendron aralioides HOM05D004595 ORTHO05D005800 1.1e-24 119.0 524 29.2
FAN01G2950 Fragaria x ananassa HOM05D004595 ORTHO05D005800 1.9e-24 118.2 489 27.6
CANSAT25G1576 Cannabis sativa HOM05D004595 ORTHO05D005800 3.2e-24 117.5 517 27.1
Hund14485 Selenicereus undatus HOM05D004595 ORTHO05D005800 4.6e-23 113.6 536 25.2
MBI04_g28359_MAGBIO Magnolia biondii HOM05D004595 ORTHO05D005800 3.3e-21 107.5 498 26.9
MD06G1048400 Malus domestica HOM05D004595 ORTHO05D005800 1.7e-17 95.1 499 25.5
Sc01g0008080 Simmondsia chinensis HOM05D004595 ORTHO05D005800 3.7e-17 94.0 521 24.2
Aqoxy3G02685 Aquilegia oxysepala HOM05D004595 ORTHO05D005800 1.1e-16 92.4 121 41.3
Nn1g08279 Nelumbo nucifera HOM05D004595 ORTHO05D005800 5.4e-16 90.1 525 24.8
Dinv28865 Davidia involucrata HOM05D004595 ORTHO05D005800 1.6e-15 88.6 125 40.8
Actinidia31498 Actinidia chinensis HOM05D004595 ORTHO05D005800 2.1e-15 88.2 538 24.2
MD04G1051700 Malus domestica HOM05D004595 ORTHO05D005800 7.8e-15 86.3 503 24.9
Potri.003G082600 Populus trichocarpa HOM05D004595 ORTHO05D005800 2.3e-14 84.7 496 23.2
Ca_14806_v3 Cicer arietinum L. HOM05D004595 ORTHO05D005800 8.6e-14 82.8 508 24.2
CSS0020169 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 1.5e-13 82.0 510 22.2
Lj2C227T10 Lonicera japonica HOM05D004595 ORTHO05D005800 1.5e-13 82.0 116 40.5
Phvul.010G046800 Phaseolus vulgaris HOM05D004595 ORTHO05D005800 7.3e-13 79.7 504 22.2
VMungo0331G1450 Vigna mungo HOM05D004595 ORTHO05D005800 9.6e-13 79.3 486 23.5
Actinidia10859 Actinidia chinensis HOM05D004595 ORTHO05D005800 3.6e-12 77.4 122 40.2
AUR62018854 Chenopodium quinoa HOM05D004595 ORTHO05D005800 6.2e-12 76.6 513 22.4
FvH4_7g10370 Fragaria vesca HOM05D004595 ORTHO05D005800 6.2e-12 76.6 294 26.5
Sopen08g026500 Solanum pennellii HOM05D004595 ORTHO05D005800 1.1e-11 75.9 109 35.8
Eucgr.D02127 Eucalyptus grandis HOM05D004595 ORTHO05D005800 1.8e-11 75.1 80 43.8
arahy.Tifrunner.gnm1.ann1.XA3BYX Arachis hypogaea HOM05D004595 ORTHO05D005800 2.4e-11 74.7 508 23.4
TAR374G0761 Trochodendron aralioides HOM05D004595 ORTHO05D005800 2.4e-11 74.7 120 40.8
arahy.Tifrunner.gnm1.ann1.F9ZABX Arachis hypogaea HOM05D004595 ORTHO05D005800 4.0e-11 73.9 519 24.7
Glyma.07G115800 Glycine max HOM05D004595 ORTHO05D005800 4.0e-11 73.9 508 21.9
Solyc08g077990.3 Solanum lycopersicum HOM05D004595 ORTHO05D005800 8.9e-11 72.8 109 34.9
Duzib205G1146 Durio zibethinus HOM05D004595 ORTHO05D005800 1.5e-10 72.0 127 33.1
Glyma.03G109300 Glycine max HOM05D004595 ORTHO05D005800 1.5e-10 72.0 501 22.0
CDE04G3600 Ceratophyllum demersum HOM05D004595 ORTHO05D005800 2.0e-10 71.6 117 34.2
RcHm_v2.0_Chr7g0205281 Rosa chinensis HOM05D004595 ORTHO05D005800 2.0e-10 71.6 126 36.5
Oeu054277.1 Olea europaea HOM05D004595 ORTHO05D005800 2.6e-10 71.2 530 23.0
Psat4g223720 Pisum sativum HOM05D004595 ORTHO05D005800 2.6e-10 71.2 519 24.1
Peaxi162Scf00446g00213 Petunia axillaris HOM05D004595 ORTHO05D005800 5.8e-10 70.1 142 31.0
EL10Ac5g12285 Beta vulgaris HOM05D004595 ORTHO05D005800 9.9e-10 69.3 512 21.7
Prupe.5G058600 Prunus persica HOM05D004595 ORTHO05D005800 9.9e-10 69.3 141 29.8
Gorai.007G029800 Gossypium raimondii HOM05D004595 ORTHO05D005800 1.3e-09 68.9 77 42.9
Lalb_Chr12g0210541 Lupinus albus HOM05D004595 ORTHO05D005800 1.3e-09 68.9 498 24.1
Oeu037379.1 Olea europaea HOM05D004595 ORTHO05D005800 1.3e-09 68.9 121 34.7
Ah.12g054050 Amaranthus hybridus HOM05D004595 ORTHO05D005800 1.7e-09 68.6 70 45.7
Rhsim07G0118500 Rhododendron simsii HOM05D004595 ORTHO05D005800 1.7e-09 68.6 511 22.9
Gohir.A11G028800 Gossypium hirsutum HOM05D004595 ORTHO05D005800 2.2e-09 68.2 77 42.9
Gohir.D11G027300 Gossypium hirsutum HOM05D004595 ORTHO05D005800 2.2e-09 68.2 77 41.6
CAN.G761.19 Capsicum annuum HOM05D004595 ORTHO05D005800 2.9e-09 67.8 107 36.4
COL.COLO4_07512 Corchorus olitorius HOM05D004595 ORTHO05D005800 2.9e-09 67.8 93 39.8
DCAR_004592 Daucus carota HOM05D004595 ORTHO05D005800 2.9e-09 67.8 75 44.0
Rhsim07G0118300 Rhododendron simsii HOM05D004595 ORTHO05D005800 2.9e-09 67.8 514 23.2
PGSC0003DMG400026251 Solanum tuberosum HOM05D004595 ORTHO05D005800 2.9e-09 67.8 109 33.9
PGR031G0135 Punica granatum HOM05D004595 ORTHO05D005800 3.8e-09 67.4 118 38.1
FAN13G1547 Fragaria x ananassa HOM05D004595 ORTHO05D005800 6.4e-09 66.6 110 37.3
FAN08G0032 Fragaria x ananassa HOM05D004595 ORTHO05D005800 8.4e-09 66.2 125 34.4
Hma1.2p1_0227F.1_g096410 Hydrangea macrophylla HOM05D004595 ORTHO05D005800 1.1e-08 65.9 71 46.5
Manes.01G087300 Manihot esculenta HOM05D004595 ORTHO05D005800 1.1e-08 65.9 120 37.5
Nitab4.5_0000500g0120 Nicotiana tabacum HOM05D004595 ORTHO05D005800 1.1e-08 65.9 112 34.8
Gohir.D08G184200 Gossypium hirsutum HOM05D004595 ORTHO05D005800 1.4e-08 65.5 76 42.1
Gorai.004G193500 Gossypium raimondii HOM05D004595 ORTHO05D005800 1.4e-08 65.5 76 42.1
Gohir.A08G165500 Gossypium hirsutum HOM05D004595 ORTHO05D005800 1.9e-08 65.1 76 42.1
Lsat_1_v5_gn_6_93760 Lactuca sativa HOM05D004595 ORTHO05D005800 2.4e-08 64.7 553 24.2
Atru.chr9.1225 Acer truncatum HOM05D004595 ORTHO05D005800 3.2e-08 64.3 116 36.2
Thecc.03G242900 Theobroma cacao HOM05D004595 ORTHO05D005800 4.2e-08 63.9 271 24.7
HPP92_025687 Vanilla planifolia HOM05D004595 ORTHO05D005800 4.2e-08 63.9 115 40.0
Lj3g0024575 Lotus japonicus HOM05D004595 ORTHO05D005800 5.4e-08 63.5 70 44.3
Nitab4.5_0007628g0030 Nicotiana tabacum HOM05D004595 ORTHO05D005800 5.4e-08 63.5 109 32.1
Sabra03G0053300 Salix brachista HOM05D004595 ORTHO05D005800 5.4e-08 63.5 143 32.2
DCAR_005580 Daucus carota HOM05D004595 ORTHO05D005800 7.1e-08 63.2 121 33.1
HanXRQChr13g0418201 Helianthus annuus HOM05D004595 ORTHO05D005800 7.1e-08 63.2 110 36.4
QL12p009065 Quercus lobata HOM05D004595 ORTHO05D005800 7.1e-08 63.2 68 44.1
FvH4_5g20210 Fragaria vesca HOM05D004595 ORTHO05D005800 2.1e-07 61.6 110 37.3
FAN18G0798 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.1e-07 61.6 74 43.2
SHI20405 Sapria himalayana HOM05D004595 ORTHO05D005800 2.1e-07 61.6 158 32.3
TPR.G32138 Trifolium pratense HOM05D004595 ORTHO05D005800 2.1e-07 61.6 84 34.5
Haze_07975 Corylus avellana HOM05D004595 ORTHO05D005800 2.7e-07 61.2 108 35.2
TWI60G0774 Tripterygium wilfordii HOM05D004595 ORTHO05D005800 2.7e-07 61.2 74 40.5
Zm00001eb391030 Zea mays HOM05D004595 ORTHO05D005800 3.0e-06 57.8 526 22.6
Sabra01G0121600 Salix brachista HOM05D004595 ORTHO05D005800 5.1e-06 57.0 535 21.3
Ciclev10018937m.g Citrus clementina HOM05D004595 ORTHO05D005800 8.7e-06 56.2 62 43.5


User provided reference genes

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