Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.5e-188 662.1 386 100.0
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.7e-155 553.1 399 84.0
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.2e-118 430.6 391 66.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 6.0e-65 252.3 401 47.6
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.3e-59 234.6 440 47.5
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.7e-20 104.0 216 38.4
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.5e-20 103.2 216 38.4
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.9e-20 102.8 216 38.0
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 1.0e-19 102.1 267 37.5
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.8e-19 100.1 220 35.0
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.8e-19 100.1 378 33.1
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 4.2e-18 96.7 225 37.3
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.2e-17 95.1 394 34.0
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 2.1e-17 94.4 260 35.4
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 2.7e-17 94.0 248 32.7
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 2.7e-17 94.0 241 35.7
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.6e-17 93.6 243 35.4
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 3.6e-17 93.6 243 38.7
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.7e-17 93.2 243 34.2
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 8.0e-17 92.4 247 34.4
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.0e-16 90.5 254 35.4
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 5.2e-16 89.7 253 32.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.6e-15 87.4 256 33.6
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 5.7e-15 86.3 241 32.0
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.7e-15 86.3 383 29.5
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 9.8e-15 85.5 282 33.0
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.3e-14 85.1 240 32.9
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.2e-14 84.3 279 30.1
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 3.7e-14 83.6 290 32.4
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 6.3e-14 82.8 297 32.3
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 8.3e-14 82.4 262 32.1
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.3e-14 82.4 262 32.1
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.1e-13 82.0 227 33.0
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 1.1e-13 82.0 442 31.2
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.1e-13 82.0 380 31.8
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.4e-13 81.6 232 32.3
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.4e-13 81.6 386 31.1
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.8e-13 81.3 249 31.7
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-13 81.3 262 32.1
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.8e-13 81.3 227 33.0
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 4.1e-13 80.1 265 32.5
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 5.4e-13 79.7 305 32.5
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 7.0e-13 79.3 216 33.8
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 9.1e-13 79.0 287 32.4
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.2e-12 78.6 251 31.5
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 2.0e-12 77.8 192 31.8
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 2.7e-12 77.4 299 33.1
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.5e-12 77.0 324 29.9
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 4.5e-12 76.6 451 30.4
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 4.5e-12 76.6 316 32.0
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.9e-12 76.3 410 28.5
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.7e-12 75.9 277 28.9
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 1.0e-11 75.5 239 28.5
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 1.0e-11 75.5 140 34.3
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 1.3e-11 75.1 425 28.5
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 1.3e-11 75.1 286 34.6
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.3e-11 75.1 421 32.8
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.7e-11 74.7 112 36.6
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.7e-11 74.7 334 28.1
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.3e-11 74.3 285 34.0
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.9e-11 73.9 209 30.1
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.9e-11 73.9 204 32.4
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 3.8e-11 73.6 110 45.5
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 5.0e-11 73.2 113 40.7
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 5.0e-11 73.2 393 28.8
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 6.6e-11 72.8 334 32.0
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 8.6e-11 72.4 112 36.6
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 8.6e-11 72.4 253 30.0
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 8.6e-11 72.4 200 31.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.1e-10 72.0 228 28.9
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.1e-10 72.0 114 39.5
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.1e-10 72.0 162 33.3
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.5e-10 71.6 209 30.6
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.5e-10 71.6 220 30.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.5e-10 71.6 220 30.5
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 1.5e-10 71.6 101 43.6
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.5e-10 71.6 104 41.3
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 1.5e-10 71.6 249 28.5
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 4.2e-10 70.1 392 26.8
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 9.5e-10 68.9 102 38.2
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 9.5e-10 68.9 125 33.6
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.2e-09 68.6 500 29.4
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.6e-09 68.2 143 34.3
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 2.1e-09 67.8 115 41.7
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.1e-09 67.8 114 37.7
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.8e-09 67.4 424 33.3
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 2.8e-09 67.4 102 37.3
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.8e-09 67.4 114 37.7
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.6e-09 67.0 372 25.8
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 3.6e-09 67.0 208 31.2
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 3.6e-09 67.0 211 30.3
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.7e-09 66.6 115 38.3
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 6.1e-09 66.2 315 29.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 8.0e-09 65.9 395 28.1
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 8.0e-09 65.9 121 36.4
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 1.4e-08 65.1 231 29.0
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.4e-08 65.1 220 30.0
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.4e-08 65.1 396 27.0
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.8e-08 64.7 398 26.1
PGSC0003DMG400046434 Solanum tuberosum HOM05D019980 ORTHO05D022204 1.8e-08 64.7 104 36.5
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 2.3e-08 64.3 399 30.3
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.0e-08 63.9 108 39.8
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 4.0e-08 63.5 160 37.5
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 6.8e-08 62.8 114 34.2
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 6.8e-08 62.8 241 29.0
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 8.9e-08 62.4 258 29.5
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 8.9e-08 62.4 104 35.6
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.2e-07 62.0 139 33.1
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 1.2e-07 62.0 139 33.1
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.2e-07 62.0 370 25.9
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.5e-07 61.6 111 33.3
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.5e-07 61.6 144 31.9
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 2.0e-07 61.2 121 38.0
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 2.0e-07 61.2 134 32.8
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 2.6e-07 60.8 100 37.0
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 4.4e-07 60.1 121 30.6
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 4.4e-07 60.1 249 26.9
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 4.4e-07 60.1 241 29.5
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 5.7e-07 59.7 132 32.6
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.7e-07 59.7 106 34.9
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 5.7e-07 59.7 255 31.4
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.7e-07 59.7 102 33.3
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 7.5e-07 59.3 163 27.6
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 7.5e-07 59.3 119 30.3
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-06 58.5 117 35.9
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 1.3e-06 58.5 154 27.9
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 1.3e-06 58.5 126 33.3
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.7e-06 58.2 107 28.0
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.7e-06 58.2 111 32.4
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 2.2e-06 57.8 132 32.6
Solyc01g096250.2 Solanum lycopersicum HOM05D019980 ORTHO05D022204 2.2e-06 57.8 97 35.1
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 2.8e-06 57.4 92 42.4
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 2.8e-06 57.4 123 30.1
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 2.8e-06 57.4 120 32.5
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 3.7e-06 57.0 100 37.0
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.7e-06 57.0 124 30.6
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 3.7e-06 57.0 209 28.7
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 3.7e-06 57.0 102 31.4
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 3.7e-06 57.0 97 36.1
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 3.7e-06 57.0 254 26.4
Sopen01g040010 Solanum pennellii HOM05D019980 ORTHO05D022204 3.7e-06 57.0 97 36.1
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 4.9e-06 56.6 153 29.4
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 4.9e-06 56.6 153 29.4
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.9e-06 56.6 111 30.6
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 6.3e-06 56.2 251 27.5
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 6.3e-06 56.2 251 27.5
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 6.3e-06 56.2 251 27.5
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 6.3e-06 56.2 105 36.2
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 8.3e-06 55.8 112 29.5
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 8.3e-06 55.8 258 27.9
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 8.3e-06 55.8 95 36.8
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 8.3e-06 55.8 214 30.8
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.3e-06 55.8 101 33.7
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 8.3e-06 55.8 203 27.6
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 8.3e-06 55.8 105 33.3
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 8.3e-06 55.8 105 34.3


User provided reference genes

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