Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 8.8e-85 317.0 171 100.0
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 2.7e-57 225.7 119 99.2
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.1e-47 193.7 127 80.3
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 7.3e-47 191.0 125 78.4
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.6e-46 188.7 120 80.8
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 4.7e-46 188.3 119 82.4
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 4.7e-46 188.3 124 78.2
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 6.2e-46 188.0 128 75.0
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 8.1e-46 187.6 113 84.1
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 1.1e-45 187.2 115 84.3
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.4e-45 186.0 114 84.2
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 2.4e-45 186.0 114 82.5
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 5.2e-45 184.9 112 84.8
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 5.2e-45 184.9 114 83.3
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 5.2e-45 184.9 114 83.3
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 1.2e-44 183.7 113 85.0
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.5e-44 183.3 112 83.9
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 1.5e-44 183.3 112 82.1
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 3.4e-44 182.2 112 82.1
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 3.4e-44 182.2 115 83.5
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 3.4e-44 182.2 153 66.7
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 4.4e-44 181.8 118 80.5
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.8e-44 181.4 122 77.9
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.8e-44 181.4 122 77.9
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 9.9e-44 180.6 122 76.2
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 9.9e-44 180.6 118 81.4
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.7e-43 179.9 122 75.4
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.2e-43 179.5 112 81.2
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.9e-43 179.1 125 72.8
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.9e-43 179.1 112 82.1
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.8e-43 178.7 107 86.0
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 6.4e-43 177.9 114 83.3
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 6.4e-43 177.9 107 86.0
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 8.4e-43 177.6 116 78.4
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.1e-42 177.2 114 81.6
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.1e-42 177.2 109 83.5
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.4e-42 176.8 113 79.6
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.9e-42 176.4 122 74.6
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.4e-42 176.0 114 79.8
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 2.4e-42 176.0 114 79.8
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 3.2e-42 175.6 107 84.1
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 4.2e-42 175.3 127 75.6
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 4.2e-42 175.3 127 74.8
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 5.4e-42 174.9 120 78.3
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 5.4e-42 174.9 109 82.6
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 5.4e-42 174.9 124 75.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.2e-41 173.7 113 79.6
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.6e-41 173.3 119 78.2
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.6e-41 173.3 112 80.4
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.6e-41 173.3 112 78.6
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.1e-41 172.9 126 71.4
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 2.1e-41 172.9 108 84.3
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 2.1e-41 172.9 107 83.2
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.1e-41 172.9 117 76.9
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 2.7e-41 172.6 114 76.3
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 2.7e-41 172.6 109 80.7
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.5e-41 172.2 114 77.2
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 3.5e-41 172.2 114 78.1
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.6e-41 171.8 103 85.4
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 6.0e-41 171.4 120 74.2
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 2.3e-40 169.5 111 79.3
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 2.3e-40 169.5 103 83.5
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 3.9e-40 168.7 106 83.0
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 5.1e-40 168.3 112 75.9
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.6e-40 167.9 104 84.6
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.6e-40 167.9 104 84.6
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 6.6e-40 167.9 105 80.0
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.6e-40 167.9 112 77.7
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 8.7e-40 167.5 106 79.2
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 8.7e-40 167.5 106 79.2
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.5e-39 166.8 106 78.3
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 1.9e-39 166.4 112 75.9
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.9e-39 166.4 101 81.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.9e-39 166.4 101 81.2
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.3e-39 165.6 107 78.5
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 4.3e-39 165.2 111 74.8
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 9.6e-39 164.1 108 81.5
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 9.6e-39 164.1 107 78.5
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.6e-38 163.3 104 79.8
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.1e-38 162.9 106 76.4
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.1e-38 162.9 106 76.4
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.1e-38 162.9 105 78.1
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.1e-38 162.9 104 79.8
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.1e-38 162.9 106 77.4
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 2.8e-38 162.5 114 74.6
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.6e-38 162.2 107 77.6
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.8e-38 161.8 107 76.6
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.8e-38 161.8 111 73.9
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 6.2e-38 161.4 107 75.7
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 6.2e-38 161.4 107 77.6
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 8.1e-38 161.0 108 75.9
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 8.1e-38 161.0 108 75.9
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 8.1e-38 161.0 119 71.4
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 8.1e-38 161.0 108 75.9
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.1e-37 160.6 104 79.8
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.1e-37 160.6 114 73.7
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-37 160.6 119 71.4
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.4e-37 160.2 119 70.6
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 2.4e-37 159.5 107 74.8
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.4e-37 159.5 107 75.7
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 3.1e-37 159.1 127 68.5
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.1e-37 159.1 106 77.4
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 4.0e-37 158.7 116 71.6
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 4.0e-37 158.7 106 76.4
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 4.0e-37 158.7 106 76.4
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.0e-37 158.7 113 76.1
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 6.9e-37 157.9 126 68.3
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 9.0e-37 157.5 105 79.0
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.2e-36 157.1 101 78.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 3.4e-36 155.6 103 77.7
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 5.8e-36 154.8 133 65.4
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.9e-35 152.5 133 65.4
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 2.9e-35 152.5 125 68.0
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 3.8e-35 152.1 143 59.4
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.4e-34 149.4 116 69.0
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 4.2e-34 148.7 118 68.6
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 4.6e-33 145.2 115 68.7
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 2.3e-32 142.9 92 79.3
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 5.1e-32 141.7 80 87.5
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.1e-31 140.6 122 63.1
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 3.3e-31 139.0 189 47.1
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 9.6e-31 137.5 162 56.2
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 9.6e-31 137.5 166 50.6
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.6e-30 136.7 118 61.9
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 6.2e-30 134.8 116 62.1
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 6.9e-29 131.3 80 80.0
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 4.9e-27 125.2 192 43.2
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 5.4e-26 121.7 88 72.7
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 9.3e-26 120.9 124 59.7
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.2e-25 120.6 88 71.6
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.9e-24 115.5 72 77.8
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 8.7e-24 114.4 98 60.2
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 4.3e-23 112.1 226 36.7
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 4.8e-22 108.6 66 84.8
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 4.8e-22 108.6 66 84.8
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.1e-21 107.5 68 77.9
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.3e-19 100.5 83 66.3
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 8.4e-19 97.8 81 65.4
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 1.6e-17 93.6 81 64.2
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 3.5e-17 92.4 72 63.9
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-16 90.5 61 75.4
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 5.1e-16 88.6 138 47.1
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 8.7e-16 87.8 101 48.5
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.9e-15 86.7 63 71.4
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-13 80.5 77 58.4
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.4e-13 80.5 77 58.4
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.4e-13 80.5 77 58.4
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 2.4e-13 79.7 54 81.5
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 6.9e-13 78.2 177 36.7
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 2.9e-11 72.8 109 44.0
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 2.9e-11 72.8 45 82.2
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 5.0e-11 72.0 34 94.1
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 2.1e-09 66.6 51 66.7
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-07 60.1 45 68.9
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 1.6e-06 57.0 40 72.5
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 4.8e-06 55.5 42 69.0


User provided reference genes

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