Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.3e-77 291.6 141 100.0
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.8e-46 189.5 92 97.8
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 8.1e-44 180.6 91 94.5
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.0e-33 147.1 87 78.2
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.0e-33 147.1 87 74.7
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.9e-33 145.6 92 73.9
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 2.9e-33 145.6 92 70.7
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 5.0e-33 144.8 92 73.9
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 5.0e-33 144.8 92 75.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.4e-32 143.3 92 71.7
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.9e-32 142.9 88 73.9
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.5e-32 142.5 88 80.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.5e-32 142.5 92 69.6
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 4.2e-32 141.7 92 69.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 4.2e-32 141.7 88 72.7
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.2e-32 141.7 88 72.7
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 7.2e-32 141.0 87 73.6
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 9.3e-32 140.6 92 72.8
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 9.3e-32 140.6 88 71.6
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.6e-31 139.8 88 71.6
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 3.6e-31 138.7 92 67.4
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.6e-31 138.7 87 72.4
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.6e-31 138.3 94 69.1
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 4.6e-31 138.3 84 73.8
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 6.1e-31 137.9 89 73.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 7.9e-31 137.5 87 72.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.9e-31 137.5 88 70.5
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.8e-30 136.3 90 73.3
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.8e-30 136.3 94 68.1
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.8e-30 136.3 92 71.7
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 2.3e-30 136.0 88 71.6
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.3e-30 136.0 92 70.7
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.1e-30 134.8 94 67.0
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 6.7e-30 134.4 94 67.0
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 6.7e-30 134.4 83 74.7
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 6.7e-30 134.4 83 74.7
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 6.7e-30 134.4 96 67.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 8.7e-30 134.0 88 70.5
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 8.7e-30 134.0 94 67.0
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.5e-29 133.3 89 71.9
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.5e-29 133.3 100 67.0
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.5e-29 133.3 81 74.1
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.9e-29 132.9 91 70.3
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.5e-29 132.5 80 75.0
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.3e-29 131.7 95 68.4
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 4.3e-29 131.7 87 67.8
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 7.4e-29 131.0 88 70.5
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 7.4e-29 131.0 100 65.0
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 9.7e-29 130.6 95 68.4
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 9.7e-29 130.6 87 67.8
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 9.7e-29 130.6 93 69.9
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.6e-28 129.8 83 73.5
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.6e-28 129.8 94 68.1
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.2e-28 129.4 90 68.9
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 2.2e-28 129.4 92 68.5
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 2.2e-28 129.4 80 72.5
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 2.8e-28 129.0 93 66.7
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 6.3e-28 127.9 104 62.5
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 8.2e-28 127.5 89 66.3
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 8.2e-28 127.5 88 69.3
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.1e-27 127.1 87 69.0
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.1e-27 127.1 76 76.3
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-27 126.7 73 78.1
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.4e-27 125.9 87 63.2
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 3.1e-27 125.6 73 78.1
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 3.1e-27 125.6 73 78.1
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 3.1e-27 125.6 73 76.7
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 4.1e-27 125.2 91 62.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 4.1e-27 125.2 105 60.0
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.1e-27 125.2 104 61.5
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 5.3e-27 124.8 73 79.5
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 5.3e-27 124.8 73 79.5
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 5.3e-27 124.8 95 62.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.2e-26 123.6 80 71.2
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-26 123.2 92 65.2
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-26 123.2 92 65.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 2.0e-26 122.9 78 73.1
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.0e-26 122.9 83 71.1
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 2.6e-26 122.5 78 71.8
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 4.5e-26 121.7 78 73.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 4.5e-26 121.7 91 65.9
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 7.7e-26 120.9 84 70.2
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 7.7e-26 120.9 79 70.9
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 7.7e-26 120.9 92 67.4
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.0e-25 120.6 73 74.0
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.0e-25 120.6 73 74.0
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.0e-25 120.6 80 70.0
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-25 120.2 81 66.7
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.9e-25 119.0 91 64.8
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 2.9e-25 119.0 79 69.6
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 3.8e-25 118.6 71 74.6
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 5.0e-25 118.2 92 62.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 5.0e-25 118.2 81 70.4
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 5.0e-25 118.2 87 69.0
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.5e-25 117.9 84 69.0
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 6.5e-25 117.9 87 67.8
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 8.5e-25 117.5 79 72.2
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-24 117.1 83 69.9
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.1e-24 117.1 94 61.7
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.4e-24 116.7 88 65.9
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.4e-24 116.7 89 60.7
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 3.2e-24 115.5 96 60.4
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 4.2e-24 115.2 70 77.1
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.2e-24 115.2 70 77.1
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.2e-24 115.2 83 68.7
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 9.4e-24 114.0 92 59.8
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 9.4e-24 114.0 70 75.7
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 9.4e-24 114.0 70 75.7
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 9.4e-24 114.0 87 64.4
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 9.4e-24 114.0 85 68.2
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 9.4e-24 114.0 79 64.6
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-23 112.8 79 67.1
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.7e-23 112.5 82 63.4
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 4.6e-23 111.7 66 77.3
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.6e-23 111.7 82 59.8
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 7.9e-23 110.9 79 67.1
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.0e-22 110.5 74 67.6
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.3e-22 109.4 93 60.2
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.3e-22 109.4 93 60.2
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.9e-22 108.6 66 74.2
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 3.9e-22 108.6 82 59.8
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 5.1e-22 108.2 89 59.6
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 5.1e-22 108.2 77 64.9
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.1e-21 107.1 66 72.7
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.5e-21 106.7 89 58.4
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.5e-21 106.7 89 58.4
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 4.4e-21 105.1 78 65.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.7e-21 104.8 79 67.1
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 7.4e-21 104.4 67 71.6
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 6.3e-20 101.3 85 54.1
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.4e-19 99.4 88 58.0
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 6.9e-19 97.8 83 56.6
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.2e-18 97.1 63 69.8
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-18 97.1 75 62.7
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.2e-18 97.1 75 62.7
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.2e-18 97.1 73 63.0
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 7.7e-18 94.4 63 65.1
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.7e-17 93.2 91 53.8
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.9e-16 89.7 68 61.8
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.5e-16 89.4 69 63.8
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 3.2e-16 89.0 84 51.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 4.2e-16 88.6 62 61.3
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 5.5e-16 88.2 76 59.2
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 7.2e-16 87.8 62 62.9
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 9.4e-16 87.4 63 63.5
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.4e-16 87.4 56 73.2
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.6e-15 86.7 64 60.9
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.6e-15 85.5 56 71.4
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 4.7e-15 85.1 61 65.6
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 6.7e-14 81.3 115 42.6
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-12 77.0 50 72.0
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 8.2e-12 74.3 44 72.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.1e-11 73.9 63 50.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.0e-09 65.1 42 64.3
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 8.5e-09 64.3 61 47.5
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 4.7e-07 58.5 42 69.0
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 5.2e-06 55.1 47 55.3


User provided reference genes

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