Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 2.7e-172 608.6 314 100.0
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.8e-163 579.3 314 95.2
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 2.5e-146 522.3 310 87.4
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.8e-128 463.0 277 83.0
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 3.1e-128 462.2 255 94.5
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 5.0e-126 454.9 311 75.6
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 2.5e-125 452.6 302 76.8
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 4.7e-124 448.4 311 76.2
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.4e-123 446.8 302 76.2
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 6.7e-123 444.5 279 81.0
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.5e-122 443.4 287 79.4
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.0e-122 443.0 314 72.9
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.0e-122 443.0 277 81.2
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 3.3e-122 442.2 274 81.0
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 5.7e-122 441.4 295 75.9
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.3e-121 440.3 316 72.8
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.7e-121 439.9 279 79.9
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 4.8e-121 438.3 277 80.5
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 4.8e-121 438.3 314 72.3
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 4.8e-121 438.3 314 72.3
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 6.3e-121 438.0 309 73.5
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 6.3e-121 438.0 316 72.8
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 8.2e-121 437.6 278 79.9
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 8.2e-121 437.6 278 80.6
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.1e-120 437.2 314 72.6
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.1e-120 437.2 291 76.6
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.1e-120 437.2 295 75.6
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.1e-120 437.2 313 72.8
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.8e-120 436.4 307 73.6
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 2.4e-120 436.0 291 76.3
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 3.1e-120 435.6 279 79.2
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.1e-120 435.6 303 72.3
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 4.1e-120 435.3 259 82.2
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 7.0e-120 434.5 295 75.3
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 9.1e-120 434.1 316 71.5
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 9.1e-120 434.1 292 75.7
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.2e-119 433.7 266 81.6
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.2e-119 433.7 279 78.5
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.6e-119 433.3 291 76.3
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.6e-119 433.3 277 78.0
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-119 433.3 259 81.5
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.6e-119 432.6 294 75.5
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 3.5e-119 432.2 265 80.8
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 4.5e-119 431.8 309 73.1
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 7.7e-119 431.0 272 78.7
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 7.7e-119 431.0 302 70.5
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.3e-118 430.3 311 71.7
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.3e-118 430.3 310 72.6
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.7e-118 429.9 269 78.4
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.7e-118 429.9 319 71.5
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.7e-118 429.9 281 77.2
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.7e-118 429.9 272 79.0
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.7e-118 429.9 306 70.3
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 2.2e-118 429.5 263 80.2
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.9e-118 429.1 319 71.5
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 2.9e-118 429.1 314 72.0
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 3.8e-118 428.7 269 78.8
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 3.8e-118 428.7 314 72.3
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 6.5e-118 427.9 273 77.7
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.5e-118 427.9 259 81.5
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 8.5e-118 427.6 270 78.5
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 8.5e-118 427.6 266 80.1
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.5e-117 426.8 266 79.7
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 3.2e-117 425.6 265 78.5
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.2e-117 425.6 271 77.5
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 4.2e-117 425.2 271 77.5
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 5.5e-117 424.9 271 77.5
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 7.2e-117 424.5 269 78.1
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 9.4e-117 424.1 265 79.2
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.6e-116 423.3 269 77.7
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 3.6e-116 422.2 271 76.8
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 3.6e-116 422.2 271 76.8
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 3.6e-116 422.2 305 71.1
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 4.7e-116 421.8 269 77.3
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.0e-116 421.0 314 69.4
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.4e-115 420.2 268 76.5
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.4e-115 420.2 338 65.7
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.8e-115 419.9 297 72.7
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.8e-115 419.9 297 72.1
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.8e-115 419.9 268 76.5
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.5e-114 416.8 271 77.1
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.4e-114 415.6 299 70.9
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.8e-113 411.8 307 71.3
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.8e-113 411.8 329 66.6
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 4.8e-113 411.8 247 82.6
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.3e-113 411.0 329 66.9
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.4e-112 410.2 300 69.3
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.5e-111 405.2 271 74.2
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 4.5e-111 405.2 269 74.7
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.7e-110 403.3 315 70.2
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.1e-109 400.6 265 76.6
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.9e-109 399.8 266 74.8
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 8.0e-108 394.4 270 72.6
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 2.6e-106 389.4 247 78.1
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.6e-106 389.4 304 67.1
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.7e-105 385.6 292 68.5
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.4e-104 383.6 253 77.1
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.3e-102 377.1 257 74.7
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.7e-102 376.7 227 80.6
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.7e-102 376.7 374 57.0
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 1.5e-101 373.6 266 69.2
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 5.6e-101 371.7 258 73.3
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 5.6e-101 371.7 277 67.9
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 9.5e-101 370.9 233 79.0
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.1e-100 369.8 282 68.8
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 4.0e-99 365.5 259 73.0
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.5e-98 363.6 263 68.4
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.0e-95 353.2 262 67.6
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.7e-94 350.1 278 64.4
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 3.3e-93 345.9 297 65.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.2e-92 344.0 307 61.2
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 3.6e-92 342.4 242 72.3
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.2e-90 337.4 250 70.8
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 4.4e-90 335.5 264 67.0
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.1e-88 330.9 236 74.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 7.0e-88 328.2 289 58.5
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 4.6e-87 325.5 262 61.1
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 6.6e-86 321.6 262 64.1
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.3e-83 313.2 271 64.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 3.1e-83 312.8 174 89.7
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.1e-83 312.8 283 60.8
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.0e-82 310.1 242 68.6
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 3.2e-80 302.8 177 86.4
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.3e-78 297.4 183 85.8
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.5e-77 293.9 271 59.0
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.4e-73 278.5 183 73.2
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 9.2e-72 274.6 183 72.7
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 2.7e-63 246.5 181 71.8
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 7.8e-63 245.0 154 77.3
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-62 244.2 170 72.4
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.6e-60 237.3 140 84.3
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.0e-58 230.3 260 47.3
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 4.3e-53 212.6 168 67.9
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 6.2e-52 208.8 121 86.0
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 6.2e-52 208.8 121 86.0
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 5.3e-51 205.7 121 83.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.0e-50 203.8 121 82.6
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 5.8e-50 202.2 150 70.0
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.4e-42 176.4 111 76.6
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.7e-41 174.1 108 80.6
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.9e-37 160.6 130 56.9
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.8e-36 156.0 142 57.0
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.8e-36 156.0 110 69.1
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.8e-33 146.4 110 68.2
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.4e-32 144.4 97 73.2
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 2.5e-32 143.7 263 35.7
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.2e-32 143.3 157 49.7
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.2e-32 143.3 116 62.1
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 3.9e-30 136.3 189 42.9
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.5e-29 134.4 86 73.3
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.3e-25 121.3 77 81.8
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.3e-22 110.5 73 71.2
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.1e-21 108.2 70 75.7
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.3e-21 106.7 69 72.5
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 6.3e-20 102.4 74 67.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-17 95.1 57 80.7
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-17 95.1 57 80.7
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.4e-16 91.3 198 36.4
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.8e-14 84.3 112 46.4
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 2.4e-11 73.9 46 71.7
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.7e-07 60.5 243 24.7
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 8.0e-07 58.9 34 73.5


User provided reference genes

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