Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.8e-186 653.7 337 100.0
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.6e-178 627.9 337 95.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.7e-169 597.0 338 92.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.0e-161 572.0 337 87.2
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.1e-144 516.9 338 79.9
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.7e-143 511.9 338 80.5
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.1e-139 500.4 343 78.1
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 6.8e-129 464.5 399 65.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.6e-77 292.4 353 52.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 5.6e-75 285.4 348 50.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.8e-74 283.1 383 48.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 4.8e-74 282.3 360 48.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.8e-73 280.4 348 50.0
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.4e-73 280.0 345 50.7
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.9e-73 278.5 342 50.9
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 6.9e-73 278.5 354 49.2
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 6.9e-73 278.5 347 49.6
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 9.0e-73 278.1 348 48.3
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.5e-72 277.3 336 50.0
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.0e-72 276.9 342 50.6
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.7e-71 273.9 358 47.8
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.9e-71 273.1 343 47.5
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.4e-70 270.8 348 48.9
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 5.4e-70 268.9 358 47.2
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 7.1e-70 268.5 363 46.6
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.7e-69 266.5 374 45.2
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.3e-68 264.2 388 43.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.3e-68 263.5 356 45.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.3e-68 263.5 373 46.4
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.9e-67 260.4 368 45.1
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 4.3e-67 259.2 343 48.1
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.3e-67 259.2 371 45.3
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.4e-67 258.5 360 46.4
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 9.6e-67 258.1 343 48.1
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 9.6e-67 258.1 368 46.7
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.6e-66 257.3 376 44.1
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.8e-66 256.5 359 45.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 4.8e-66 255.8 387 44.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.4e-65 254.2 371 44.7
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 4.0e-65 252.7 365 43.8
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 9.0e-65 251.5 363 44.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.0e-64 250.4 408 42.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.3e-63 247.7 368 44.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 7.1e-62 241.9 352 44.3
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 9.3e-62 241.5 355 46.5
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 6.0e-61 238.8 386 40.7
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.3e-60 236.9 399 40.9
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.3e-60 236.9 370 43.8
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.0e-60 236.5 364 44.2
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.3e-59 233.0 336 42.3
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.3e-59 233.0 358 41.3
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.4e-59 231.9 336 42.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.6e-58 230.7 342 43.6
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.8e-57 227.3 373 41.8
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.6e-56 221.9 351 41.9
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.6e-56 221.9 335 43.0
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.2e-53 214.5 306 44.1
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.5e-53 213.0 411 38.0
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.0e-52 211.5 385 39.5
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.5e-51 206.8 369 39.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.5e-51 206.8 357 38.9
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 4.3e-51 206.1 341 40.2
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 4.8e-50 202.6 327 38.8
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 6.3e-50 202.2 336 39.9
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.8e-49 200.7 299 43.8
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.8e-49 200.7 299 43.8
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 6.9e-49 198.7 339 38.6
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.5e-48 197.6 330 40.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.0e-48 197.2 340 40.0
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.9e-48 195.7 336 40.8
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.3e-47 194.5 338 40.8
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.2e-47 193.7 345 39.1
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.0e-47 192.6 361 38.2
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.5e-46 190.3 335 39.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.2e-46 189.5 371 35.6
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 7.2e-46 188.7 358 38.3
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.7e-45 186.8 361 37.7
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.3e-44 183.7 341 39.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.9e-44 183.0 373 35.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.7e-44 181.8 363 35.0
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-43 181.0 346 38.2
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.9e-43 180.6 339 38.3
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.3e-43 179.9 336 37.2
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.3e-43 179.9 328 38.1
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.4e-43 178.7 342 37.7
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 9.7e-43 178.3 328 37.2
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.6e-42 177.6 352 37.2
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.8e-42 176.8 332 39.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.8e-42 176.8 349 37.5
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 8.2e-42 175.3 332 37.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.4e-41 174.5 343 35.9
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 2.4e-41 173.7 333 37.8
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.4e-41 173.7 390 34.6
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 5.3e-41 172.6 127 66.9
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 6.9e-41 172.2 335 37.0
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.6e-40 170.2 325 38.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 5.9e-40 169.1 336 36.9
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 5.9e-40 169.1 336 36.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.0e-39 168.3 358 35.8
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-39 167.9 336 36.6
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.8e-39 166.4 327 37.3
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.8e-39 166.4 334 38.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.5e-38 163.7 337 34.7
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.5e-38 163.7 333 37.5
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.5e-38 162.5 336 36.6
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 7.2e-38 162.2 333 37.2
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 9.4e-38 161.8 332 38.3
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-36 157.5 332 36.1
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 8.8e-36 155.2 202 46.0
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.0e-35 154.1 196 50.0
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.3e-35 152.9 348 33.3
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.3e-34 151.4 300 37.7
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.8e-34 150.2 339 33.6
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 3.7e-34 149.8 306 35.9
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 4.8e-34 149.4 306 35.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.3e-34 149.1 391 34.0
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.4e-33 147.9 337 34.4
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.8e-33 147.5 379 34.3
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 5.3e-33 146.0 330 34.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.3e-33 146.0 341 32.8
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 5.3e-33 146.0 125 60.0
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 9.1e-33 145.2 300 38.0
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.7e-31 141.0 274 36.9
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 5.0e-31 139.4 198 41.9
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 9.4e-30 135.2 335 33.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-29 134.8 284 36.3
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.2e-29 134.8 284 36.3
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.6e-29 134.4 349 31.5
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.6e-29 133.3 331 30.8
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 7.9e-29 132.1 120 56.7
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.4e-28 131.3 361 32.7
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.8e-28 131.0 154 44.8
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.9e-28 129.8 153 45.1
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 3.9e-28 129.8 149 46.3
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.9e-28 129.8 153 45.1
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 6.7e-28 129.0 149 46.3
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 6.7e-28 129.0 149 46.3
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.6e-27 127.1 110 55.5
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-27 127.1 110 55.5
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.6e-27 127.1 110 55.5
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 5.7e-27 125.9 105 61.9
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.7e-26 124.4 108 60.2
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.7e-26 124.4 108 60.2
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.8e-26 122.9 451 27.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 4.1e-25 119.8 155 47.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.1e-25 119.8 107 51.4
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.2e-24 118.2 166 40.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.6e-24 117.9 108 60.2
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.0e-24 117.5 171 44.4
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.5e-24 116.7 123 50.4
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.7e-23 114.4 102 48.0
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.5e-23 112.5 338 29.0
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 8.5e-23 112.1 201 36.8
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.5e-22 109.4 71 73.2
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 9.4e-22 108.6 331 28.1
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.2e-21 108.2 127 47.2
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.2e-21 108.2 142 45.1
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.6e-21 107.8 106 53.8
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 6.1e-21 105.9 339 29.5
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 3.0e-20 103.6 169 36.1
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.1e-19 101.7 108 50.9
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.6e-19 100.5 71 64.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 7.5e-19 99.0 312 31.1
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 7.7e-16 89.0 330 29.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 6.5e-15 85.9 100 39.0
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.3e-12 77.4 83 41.0
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.4e-11 73.2 220 30.9
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.4e-09 68.2 40 75.0
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 4.1e-09 66.6 105 39.0
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-08 64.7 105 39.0
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 2.0e-08 64.3 105 40.0
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 4.5e-08 63.2 96 39.6
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.2e-06 57.0 69 42.0
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 9.5e-06 55.5 117 29.9


User provided reference genes

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