Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 4.8e-192 674.5 346 100.0
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 1.5e-185 652.9 346 96.5
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 5.7e-177 624.4 351 90.9
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 5.0e-157 558.1 347 84.4
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 5.3e-122 441.8 349 67.6
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.1e-119 434.1 362 66.9
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 2.7e-118 429.5 359 66.0
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 4.6e-118 428.7 357 66.1
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.0e-117 427.6 356 64.9
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.3e-117 427.2 364 64.0
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.0e-117 426.0 354 67.2
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.5e-116 422.9 336 67.6
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.6e-116 421.8 352 65.1
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.1e-115 419.9 365 65.5
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 2.1e-115 419.9 363 62.5
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.6e-115 419.1 336 68.2
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.4e-114 417.2 336 67.3
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.5e-113 413.7 350 65.1
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.0e-113 413.3 351 65.5
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 4.5e-113 412.1 368 65.2
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 7.6e-113 411.4 345 63.8
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 7.6e-113 411.4 345 64.6
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.9e-112 409.5 353 64.3
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 4.9e-112 408.7 377 63.1
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 6.4e-112 408.3 369 62.1
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 6.4e-112 408.3 344 65.1
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 6.4e-112 408.3 377 63.1
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.1e-111 407.5 317 68.1
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.9e-111 406.8 260 78.1
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.2e-111 405.6 300 71.7
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 5.5e-111 405.2 337 64.7
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.5e-111 405.2 351 63.2
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 7.1e-111 404.8 342 65.8
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 7.1e-111 404.8 299 72.6
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 9.3e-111 404.4 307 69.7
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 9.3e-111 404.4 307 69.7
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.6e-110 403.7 344 65.1
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 2.1e-110 403.3 317 67.5
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 3.5e-110 402.5 327 65.7
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.5e-110 402.5 327 65.7
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.5e-110 402.5 336 65.5
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.5e-110 402.5 338 63.9
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 2.3e-109 399.8 327 65.7
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 2.3e-109 399.8 327 65.7
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 3.0e-109 399.4 273 76.2
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.9e-109 399.1 323 65.9
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 3.9e-109 399.1 354 63.3
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 6.7e-109 398.3 344 64.2
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 6.7e-109 398.3 249 79.9
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 8.7e-109 397.9 255 76.9
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.1e-108 397.5 345 62.9
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.5e-108 397.1 291 70.1
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.5e-108 396.4 268 73.5
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 5.6e-108 395.2 344 64.0
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 9.6e-108 394.4 370 59.7
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 1.3e-107 394.0 316 65.8
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 1.6e-107 393.7 253 77.5
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.1e-107 393.3 375 58.7
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 8.1e-107 391.3 316 65.5
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 2.4e-106 389.8 253 76.7
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.1e-106 389.4 332 64.8
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.1e-106 389.4 332 64.8
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 5.3e-106 388.7 342 62.0
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 5.3e-106 388.7 287 67.9
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 5.3e-106 388.7 251 77.3
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 9.0e-106 387.9 277 71.5
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 9.0e-106 387.9 289 71.3
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.5e-105 387.1 253 76.7
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 2.0e-105 386.7 253 78.3
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.0e-105 386.7 342 63.5
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 2.0e-105 386.7 310 67.7
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 2.6e-105 386.3 335 63.6
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 3.4e-105 386.0 382 56.5
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 3.4e-105 386.0 249 78.3
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 4.5e-105 385.6 352 60.8
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 4.5e-105 385.6 342 62.6
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 7.6e-105 384.8 368 59.2
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 7.6e-105 384.8 249 75.9
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.0e-104 384.4 251 75.3
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.3e-104 384.0 312 65.4
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 1.7e-104 383.6 338 61.8
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 1.7e-104 383.6 338 61.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.2e-104 383.3 254 77.6
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.2e-104 383.3 325 63.4
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.9e-104 382.9 376 56.9
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 8.4e-104 381.3 264 73.9
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.9e-103 380.2 324 63.3
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 9.3e-103 377.9 382 55.8
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.0e-101 374.4 275 70.9
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.3e-101 374.0 351 59.0
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 3.0e-101 372.9 255 74.1
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 3.0e-101 372.9 248 76.2
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 8.7e-101 371.3 224 82.6
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 3.3e-100 369.4 255 72.9
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 4.3e-100 369.0 294 65.0
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 7.4e-100 368.2 255 72.5
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.8e-99 366.3 299 64.5
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.8e-99 366.3 260 69.6
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 7.6e-97 358.2 350 57.7
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.0e-96 357.8 229 75.5
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.9e-96 356.3 352 56.8
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 6.5e-96 355.1 214 80.4
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.5e-95 353.2 227 75.8
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 3.2e-95 352.8 276 65.2
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.2e-94 350.9 230 75.2
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.5e-92 344.0 264 64.4
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 3.4e-89 332.8 189 85.2
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 8.5e-88 328.2 229 69.9
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 4.2e-87 325.9 335 55.5
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 2.6e-84 316.6 178 86.5
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 9.7e-84 314.7 177 88.1
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 6.3e-83 312.0 229 65.1
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 8.2e-83 311.6 178 87.1
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-82 311.2 335 54.9
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.3e-82 308.9 242 62.8
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 7.2e-79 298.5 230 63.9
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.0e-77 294.7 211 72.0
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.7e-75 286.2 298 58.1
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.8e-74 283.9 241 59.3
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.1e-74 283.1 240 59.2
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 9.1e-74 281.6 223 62.8
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 5.0e-72 275.8 194 71.6
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.0e-69 268.1 163 82.2
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 9.4e-63 245.0 146 79.5
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.0e-61 241.5 130 90.0
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 3.0e-61 240.0 146 79.5
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 9.1e-58 228.4 364 42.9
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 1.0e-53 214.9 127 79.5
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 1.4e-53 214.5 344 43.0
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 5.2e-53 212.6 342 43.6
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.4e-50 202.6 213 46.9
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.6e-49 201.1 213 46.5
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.7e-43 181.0 320 39.4
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 3.7e-43 179.9 101 85.1
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 8.3e-43 178.7 101 85.1
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-42 178.3 101 85.1
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.8e-42 177.6 101 84.2
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 9.2e-42 175.3 101 83.2
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 9.2e-42 175.3 101 83.2
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 2.0e-41 174.1 101 83.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 3.5e-41 173.3 101 82.2
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 3.5e-41 173.3 101 82.2
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.0e-40 171.8 101 81.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-40 171.8 101 81.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.1e-39 168.3 236 41.5
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.1e-38 164.1 165 58.2
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 8.0e-38 162.2 255 38.0
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 3.7e-35 153.3 91 81.3
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 1.2e-33 148.3 234 43.2
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 9.5e-31 138.7 231 42.4
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 4.7e-30 136.3 73 91.8
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 4.7e-30 136.3 73 91.8
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 4.7e-30 136.3 73 91.8
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.1e-29 135.2 210 44.8
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.0e-29 133.3 117 61.5
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 8.9e-29 132.1 101 66.3
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.5e-28 131.3 207 45.9
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 4.4e-28 129.8 119 59.7
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 3.9e-24 116.7 185 44.3
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 7.3e-23 112.5 81 66.7
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.0e-20 104.4 63 77.8
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.7e-19 101.3 54 88.9
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.7e-19 101.3 179 32.4
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 4.1e-18 96.7 56 75.0
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 3.6e-14 83.6 44 93.2
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 4.7e-14 83.2 49 75.5
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 2.6e-12 77.4 71 59.2
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 4.4e-12 76.6 72 58.3


User provided reference genes

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