Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022093.2 Cucumis melo HOM05D007149 ORTHO05D008956 2.8e-45 184.9 90 100.0
CsaV3_5G039180 Cucumis sativus L. HOM05D007149 ORTHO05D008956 1.7e-42 175.6 90 94.4
Sed0025185 Sechium edule HOM05D007149 ORTHO05D008956 1.2e-37 159.5 88 85.2
Ah.10g037580 Amaranthus hybridus HOM05D007149 ORTHO05D008956 2.1e-37 158.7 88 85.2
Eucgr.J01478 Eucalyptus grandis HOM05D007149 ORTHO05D008956 4.0e-36 154.5 88 83.0
Atru.chr8.867 Acer truncatum HOM05D007149 ORTHO05D008956 5.2e-36 154.1 88 83.0
Manes.01G108800 Manihot esculenta HOM05D007149 ORTHO05D008956 6.8e-36 153.7 88 83.0
Nn4g23775 Nelumbo nucifera HOM05D007149 ORTHO05D008956 8.9e-36 153.3 88 81.8
Cfa007939 Carpinus fangiana HOM05D007149 ORTHO05D008956 1.2e-35 152.9 88 81.8
Hund13727 Selenicereus undatus HOM05D007149 ORTHO05D008956 1.2e-35 152.9 88 80.7
Ciclev10013207m.g Citrus clementina HOM05D007149 ORTHO05D008956 1.5e-35 152.5 88 81.8
CiPaw.04G040600 Carya illinoinensis HOM05D007149 ORTHO05D008956 2.0e-35 152.1 88 81.8
Ca_13737_v3 Cicer arietinum L. HOM05D007149 ORTHO05D008956 3.4e-35 151.4 88 80.7
Thecc.04G136400 Theobroma cacao HOM05D007149 ORTHO05D008956 3.4e-35 151.4 88 79.5
Sabra17G0093700 Salix brachista HOM05D007149 ORTHO05D008956 4.4e-35 151.0 88 81.8
THA.LOC104827153 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 4.4e-35 151.0 87 81.6
QL02p051591 Quercus lobata HOM05D007149 ORTHO05D008956 5.8e-35 150.6 88 81.8
Sc11g0008240 Simmondsia chinensis HOM05D007149 ORTHO05D008956 7.5e-35 150.2 85 82.4
COL.COLO4_16183 Corchorus olitorius HOM05D007149 ORTHO05D008956 2.2e-34 148.7 88 79.5
EL10Ac2g04594 Beta vulgaris HOM05D007149 ORTHO05D008956 2.9e-34 148.3 88 79.5
HanXRQChr12g0376461 Helianthus annuus HOM05D007149 ORTHO05D008956 2.9e-34 148.3 88 79.5
CANSAT64G1005 Cannabis sativa HOM05D007149 ORTHO05D008956 3.7e-34 147.9 88 80.7
Hma1.2p1_0550F.1_g177300 Hydrangea macrophylla HOM05D007149 ORTHO05D008956 3.7e-34 147.9 88 78.4
Aqoxy3G03934 Aquilegia oxysepala HOM05D007149 ORTHO05D008956 6.4e-34 147.1 88 79.5
THA.LOC104803005 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 6.4e-34 147.1 88 78.4
TWI74G0718 Tripterygium wilfordii HOM05D007149 ORTHO05D008956 6.4e-34 147.1 88 78.4
Dinv34841 Davidia involucrata HOM05D007149 ORTHO05D008956 1.1e-33 146.4 88 77.3
Cpa.g.sc179.16 Carica papaya HOM05D007149 ORTHO05D008956 1.4e-33 146.0 88 77.3
Migut.H00206 Erythranthe guttata HOM05D007149 ORTHO05D008956 2.4e-33 145.2 88 76.1
Glyma.19G046200 Glycine max HOM05D007149 ORTHO05D008956 3.2e-33 144.8 84 79.8
Actinidia15873 Actinidia chinensis HOM05D007149 ORTHO05D008956 4.1e-33 144.4 88 76.1
ATR0665G039 Amborella trichopoda HOM05D007149 ORTHO05D008956 4.1e-33 144.4 88 80.7
CiPaw.03G060400 Carya illinoinensis HOM05D007149 ORTHO05D008956 4.1e-33 144.4 88 77.3
Lsat_1_v5_gn_3_78860 Lactuca sativa HOM05D007149 ORTHO05D008956 4.1e-33 144.4 88 76.1
MD07G1095900 Malus domestica HOM05D007149 ORTHO05D008956 4.1e-33 144.4 88 78.4
Potri.017G113401 Populus trichocarpa HOM05D007149 ORTHO05D008956 4.1e-33 144.4 88 78.4
Solyc02g063085.1 Solanum lycopersicum HOM05D007149 ORTHO05D008956 5.4e-33 144.1 86 79.1
CSS0003707 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 1.2e-32 142.9 86 77.9
HPP92_011090 Vanilla planifolia HOM05D007149 ORTHO05D008956 1.2e-32 142.9 88 73.9
DCAR_017207 Daucus carota HOM05D007149 ORTHO05D008956 1.6e-32 142.5 88 76.1
Gohir.A07G071500 Gossypium hirsutum HOM05D007149 ORTHO05D008956 1.6e-32 142.5 86 76.7
Gohir.D07G076000 Gossypium hirsutum HOM05D007149 ORTHO05D008956 1.6e-32 142.5 86 76.7
Gorai.001G080200 Gossypium raimondii HOM05D007149 ORTHO05D008956 1.6e-32 142.5 86 76.7
Sp6g28070 Schrenkiella parvula HOM05D007149 ORTHO05D008956 1.6e-32 142.5 86 77.9
vmacro05569 Vaccinium macrocarpon HOM05D007149 ORTHO05D008956 1.6e-32 142.5 88 77.3
FvH4_6g45250 Fragaria vesca HOM05D007149 ORTHO05D008956 2.1e-32 142.1 88 75.0
FAN09G4869 Fragaria x ananassa HOM05D007149 ORTHO05D008956 2.1e-32 142.1 88 75.0
FAN14G5255 Fragaria x ananassa HOM05D007149 ORTHO05D008956 2.1e-32 142.1 88 75.0
Peaxi162Scf00501g00121 Petunia axillaris HOM05D007149 ORTHO05D008956 2.1e-32 142.1 86 77.9
Cc07_g08920 Coffea canephora HOM05D007149 ORTHO05D008956 2.7e-32 141.7 88 76.1
Os03g0257900 Oryza sativa ssp. japonica HOM05D007149 ORTHO05D008956 2.7e-32 141.7 88 75.0
CDE11G0018 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 3.5e-32 141.4 88 73.9
MD17G1105000 Malus domestica HOM05D007149 ORTHO05D008956 3.5e-32 141.4 88 77.3
RcHm_v2.0_Chr2g0162971 Rosa chinensis HOM05D007149 ORTHO05D008956 3.5e-32 141.4 88 75.0
CSS0003918 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 4.6e-32 141.0 86 76.7
Lalb_Chr04g0257361 Lupinus albus HOM05D007149 ORTHO05D008956 4.6e-32 141.0 88 73.9
Phvul.004G064400 Phaseolus vulgaris HOM05D007149 ORTHO05D008956 4.6e-32 141.0 84 78.6
PGR004G0481 Punica granatum HOM05D007149 ORTHO05D008956 4.6e-32 141.0 81 81.5
Psat1g079040 Pisum sativum HOM05D007149 ORTHO05D008956 6.0e-32 140.6 88 75.0
Actinidia36312 Actinidia chinensis HOM05D007149 ORTHO05D008956 7.8e-32 140.2 86 75.6
Zm00001eb011230 Zea mays HOM05D007149 ORTHO05D008956 7.8e-32 140.2 88 73.9
Lj2g0020616 Lotus japonicus HOM05D007149 ORTHO05D008956 1.3e-31 139.4 88 75.0
BcaB08g36883 Brassica carinata HOM05D007149 ORTHO05D008956 2.3e-31 138.7 86 75.6
CAN.G953.15 Capsicum annuum HOM05D007149 ORTHO05D008956 3.0e-31 138.3 86 74.4
PSO782G5258 Papaver somniferum HOM05D007149 ORTHO05D008956 3.0e-31 138.3 86 76.7
Thhalv10015129m.g Eutrema salsugineum HOM05D007149 ORTHO05D008956 3.9e-31 137.9 86 75.6
Medtr0024s0060 Medicago truncatula HOM05D007149 ORTHO05D008956 3.9e-31 137.9 83 79.5
unitig_899.g14509 Utricularia gibba HOM05D007149 ORTHO05D008956 5.1e-31 137.5 88 75.0
GSVIVG01031069001 Vitis vinifera HOM05D007149 ORTHO05D008956 5.1e-31 137.5 88 71.6
BcaC04g18912 Brassica carinata HOM05D007149 ORTHO05D008956 6.6e-31 137.1 86 74.4
A10p23000 Brassica napus HOM05D007149 ORTHO05D008956 6.6e-31 137.1 86 74.4
C09p60970 Brassica napus HOM05D007149 ORTHO05D008956 6.6e-31 137.1 86 74.4
BolC9t58944H Brassica oleracea HOM05D007149 ORTHO05D008956 6.6e-31 137.1 86 74.4
BraA10t44369Z Brassica rapa HOM05D007149 ORTHO05D008956 6.6e-31 137.1 86 74.4
ClCG11G005400 Citrullus lanatus HOM05D007149 ORTHO05D008956 6.6e-31 137.1 67 98.5
Aa31LG11G13550 Aethionema arabicum HOM05D007149 ORTHO05D008956 8.6e-31 136.7 86 73.3
AL6G26940 Arabidopsis lyrata HOM05D007149 ORTHO05D008956 8.6e-31 136.7 86 74.4
PSO063G3907 Papaver somniferum HOM05D007149 ORTHO05D008956 1.1e-30 136.3 86 75.6
Carub.0006s1425 Capsella rubella HOM05D007149 ORTHO05D008956 3.3e-30 134.8 86 73.3
CARHR197250 Cardamine hirsuta HOM05D007149 ORTHO05D008956 4.3e-30 134.4 86 73.3
FAN09G3419 Fragaria x ananassa HOM05D007149 ORTHO05D008956 7.3e-30 133.7 99 66.7
AT5G16060 Arabidopsis thaliana HOM05D007149 ORTHO05D008956 2.1e-29 132.1 86 70.9
Duzib133G0440 Durio zibethinus HOM05D007149 ORTHO05D008956 1.8e-28 129.0 126 54.0
FAN02G3200 Fragaria x ananassa HOM05D007149 ORTHO05D008956 3.1e-28 128.3 100 63.0
Nn3g17784 Nelumbo nucifera HOM05D007149 ORTHO05D008956 2.2e-26 122.1 72 77.8
SalBow3G3356 Salvia bowleyana HOM05D007149 ORTHO05D008956 2.9e-26 121.7 68 85.3
Haze_14138 Corylus avellana HOM05D007149 ORTHO05D008956 3.7e-26 121.3 69 82.6
Nitab4.5_0001569g0020 Nicotiana tabacum HOM05D007149 ORTHO05D008956 9.2e-25 116.7 69 75.4
TPR.G32450 Trifolium pratense HOM05D007149 ORTHO05D008956 9.2e-25 116.7 139 48.2
HPP92_011107 Vanilla planifolia HOM05D007149 ORTHO05D008956 3.5e-24 114.8 66 80.3
arahy.Tifrunner.gnm1.ann1.2T9F1Z Arachis hypogaea HOM05D007149 ORTHO05D008956 1.0e-23 113.2 76 67.1
arahy.Tifrunner.gnm1.ann1.HVR4ZG Arachis hypogaea HOM05D007149 ORTHO05D008956 1.0e-23 113.2 76 67.1
PGSC0003DMG400024179 Solanum tuberosum HOM05D007149 ORTHO05D008956 2.3e-23 112.1 70 72.9
SalBow6G3599 Salvia bowleyana HOM05D007149 ORTHO05D008956 3.9e-23 111.3 65 76.9
CDE05G2183 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 8.6e-23 110.2 66 78.8
AUR62014527 Chenopodium quinoa HOM05D007149 ORTHO05D008956 1.1e-22 109.8 65 75.4
Aa31LG2G17140 Aethionema arabicum HOM05D007149 ORTHO05D008956 1.5e-22 109.4 70 70.0
SHI30170 Sapria himalayana HOM05D007149 ORTHO05D008956 4.3e-22 107.8 66 74.2
Prupe.3G238900 Prunus persica HOM05D007149 ORTHO05D008956 1.6e-21 105.9 65 72.3
ECA246G4376 Erigeron canadensis HOM05D007149 ORTHO05D008956 2.8e-21 105.1 65 72.3
AagrBONN_evm.TU.Sc2ySwM_228.1220 Anthoceros agrestis HOM05D007149 ORTHO05D008956 3.6e-21 104.8 78 60.3
Sopen02g014160 Solanum pennellii HOM05D007149 ORTHO05D008956 1.4e-20 102.8 63 73.0
Carub.0055s0008 Capsella rubella HOM05D007149 ORTHO05D008956 1.8e-20 102.4 64 75.0
SMO356G0237 Selaginella moellendorffii HOM05D007149 ORTHO05D008956 1.2e-19 99.8 78 60.3
Pp3c20_17910 Physcomitrium patens HOM05D007149 ORTHO05D008956 2.0e-19 99.0 84 56.0
Mapoly0073s0075 Marchantia polymorpha HOM05D007149 ORTHO05D008956 7.8e-16 87.0 65 58.5
RcHm_v2.0_Chr2g0163021 Rosa chinensis HOM05D007149 ORTHO05D008956 6.6e-15 84.0 66 66.7
Nitab4.5_0002288g0070 Nicotiana tabacum HOM05D007149 ORTHO05D008956 3.3e-14 81.6 88 52.3
SGA_v2.0_scaffold33G13472 Striga asiatica HOM05D007149 ORTHO05D008956 5.3e-12 74.3 45 71.1
PRCOL_00003753 Prasinoderma coloniale HOM05D007149 ORTHO05D008956 3.8e-10 68.2 71 46.5
MCO15G246 Micromonas commoda HOM05D007149 ORTHO05D008956 1.1e-09 66.6 70 44.3


User provided reference genes

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