Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 0.0e+00 1228.0 618 100.0
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 0.0e+00 1187.9 618 97.2
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 0.0e+00 1082.0 618 89.2
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.7e-266 922.5 621 78.9
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.0e-146 524.6 614 52.0
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 3.4e-142 509.6 550 54.5
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 2.3e-138 496.9 498 56.4
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 6.8e-135 485.3 603 50.9
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 3.4e-134 483.0 561 52.8
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 4.4e-134 482.6 622 49.0
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 5.7e-134 482.3 626 50.3
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.7e-133 480.7 547 53.7
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 2.4e-132 476.9 578 50.3
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 4.1e-132 476.1 568 50.9
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 3.5e-131 473.0 617 49.4
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 7.8e-131 471.9 623 48.2
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.3e-130 471.1 552 52.0
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.8e-130 469.5 704 44.9
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 1.5e-129 467.6 516 54.3
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 4.7e-128 462.6 559 52.6
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 6.1e-128 462.2 622 48.9
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 6.1e-128 462.2 409 61.9
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.8e-127 460.7 515 53.0
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 2.3e-127 460.3 561 50.8
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 4.0e-127 459.5 557 50.6
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.2e-126 458.0 571 51.3
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 1.5e-126 457.6 544 49.8
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 2.0e-126 457.2 571 50.3
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 9.8e-126 454.9 551 48.8
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 7.0e-124 448.7 552 51.3
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 7.0e-124 448.7 547 52.3
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.2e-123 448.0 417 60.2
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 2.0e-123 447.2 561 50.1
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.0e-123 447.2 556 52.0
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 2.7e-123 446.8 563 50.1
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 6.0e-123 445.7 451 57.2
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 1.3e-122 444.5 449 57.2
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 2.3e-122 443.7 484 54.8
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.6e-122 442.2 662 44.6
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 6.6e-122 442.2 527 52.6
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.1e-121 441.4 563 49.6
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 4.3e-121 439.5 543 50.3
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 9.5e-121 438.3 551 47.7
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.6e-120 437.6 635 46.8
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 3.1e-119 433.3 674 45.0
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.8e-119 432.2 635 45.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 6.4e-117 425.6 781 40.1
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 1.9e-116 424.1 485 53.2
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.6e-115 421.0 560 47.7
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.1e-115 420.6 551 47.0
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 2.1e-115 420.6 483 52.6
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.3e-114 417.2 626 43.0
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 3.9e-114 416.4 444 53.8
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 6.6e-114 415.6 512 50.0
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 2.5e-113 413.7 505 49.7
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 3.3e-113 413.3 411 57.4
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 2.1e-112 410.6 526 48.5
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 4.7e-112 409.5 435 56.1
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 4.7e-112 409.5 434 57.4
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 6.2e-112 409.1 379 59.6
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 6.2e-112 409.1 547 46.6
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 1.4e-111 407.9 534 49.1
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 1.4e-111 407.9 551 45.2
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 4.0e-111 406.4 422 56.2
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 6.8e-111 405.6 417 54.4
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 1.5e-110 404.4 556 47.7
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 7.1e-108 395.6 452 53.3
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 7.1e-108 395.6 548 48.4
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 6.0e-107 392.5 489 50.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 7.8e-107 392.1 563 46.7
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 1.7e-106 391.0 414 53.6
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 2.5e-105 387.1 559 47.8
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 2.1e-104 384.0 442 51.6
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 1.3e-101 374.8 417 51.8
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 6.4e-101 372.5 402 54.0
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 5.4e-100 369.4 403 52.1
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.3e-98 364.0 422 51.7
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 3.9e-98 363.2 431 51.5
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 1.5e-97 361.3 469 48.8
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 4.3e-97 359.8 548 45.4
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 7.3e-97 359.0 498 45.4
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 4.7e-96 356.3 510 45.9
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 1.4e-95 354.8 458 49.6
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 3.1e-95 353.6 542 45.8
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 4.0e-95 353.2 351 57.5
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 1.3e-93 348.2 408 52.2
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.3e-93 348.2 417 48.9
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.7e-93 347.8 408 52.0
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 2.2e-93 347.4 538 44.8
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 4.9e-93 346.3 559 43.3
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 8.4e-93 345.5 412 52.2
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 8.4e-93 345.5 414 51.9
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 8.4e-93 345.5 653 38.7
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 1.1e-92 345.1 407 52.3
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.9e-92 344.4 412 52.2
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 5.4e-92 342.8 408 51.7
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 7.1e-92 342.4 407 51.8
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 7.1e-92 342.4 407 51.8
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 7.1e-92 342.4 383 50.9
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 5.1e-90 336.3 362 52.5
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 2.5e-89 334.0 386 50.8
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.1e-87 328.6 412 51.2
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 5.3e-87 326.2 410 49.5
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.2e-86 325.1 361 54.3
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 3.4e-86 323.6 325 55.1
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.2e-85 320.9 481 44.9
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 8.4e-85 318.9 396 49.2
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 3.2e-84 317.0 440 46.1
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 4.2e-84 316.6 396 48.0
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 7.1e-84 315.8 389 50.9
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 4.6e-83 313.2 380 51.8
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 7.9e-83 312.4 394 50.3
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 1.5e-81 308.1 391 49.6
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 1.5e-81 308.1 392 50.3
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 1.5e-81 308.1 391 49.6
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.9e-81 307.8 333 54.1
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 3.1e-79 300.4 401 46.9
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 4.0e-79 300.1 407 45.2
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 4.5e-78 296.6 562 40.7
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.6e-75 288.1 466 40.3
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.7e-75 287.3 472 41.3
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.3e-73 280.4 433 41.6
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.8e-72 277.3 266 60.2
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 3.7e-72 276.9 453 45.3
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 3.7e-72 276.9 476 41.0
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 7.6e-70 269.2 419 43.7
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.2e-69 267.7 425 42.8
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.8e-66 258.1 363 46.8
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.1e-65 255.4 354 46.9
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.1e-65 255.4 251 59.4
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 5.7e-65 253.1 295 49.8
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.4e-63 247.7 312 51.6
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.8e-58 231.5 326 43.9
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 2.8e-56 224.2 416 40.4
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 3.4e-54 217.2 258 50.8
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 1.1e-49 202.2 185 58.9
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 6.3e-48 196.4 271 43.5
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.9e-45 187.6 415 35.9
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.6e-43 181.8 195 54.9
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 3.1e-39 167.5 203 50.7
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.1e-36 159.1 357 33.6
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 2.1e-35 154.8 598 29.8
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 3.6e-35 154.1 179 52.5
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 4.4e-33 147.1 216 42.6
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 5.7e-25 120.2 243 33.3
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 8.6e-21 106.3 229 36.7
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 8.9e-18 96.3 357 28.0
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 7.5e-17 93.2 229 35.4
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.4e-15 89.0 214 36.9
Actinidia19277 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.2e-06 59.3 94 41.5


User provided reference genes

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