Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 0.0e+00 1084.3 612 100.0
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 1.1e-243 846.7 612 82.4
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 4.5e-216 755.0 610 75.7
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 4.3e-190 668.7 535 79.1
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 7.1e-153 545.0 621 58.8
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 3.5e-152 542.7 568 62.1
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 6.9e-148 528.5 621 57.6
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 2.9e-146 523.1 616 55.8
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 5.5e-145 518.8 610 57.5
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 2.8e-141 506.5 616 51.0
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.6e-134 483.4 558 59.1
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 7.4e-134 481.9 558 59.1
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 8.2e-133 478.4 498 62.0
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 3.1e-132 476.5 566 57.6
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.5e-131 474.2 555 58.9
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.6e-131 473.4 561 58.5
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 4.5e-131 472.6 531 61.8
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 7.7e-131 471.9 546 59.2
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.0e-130 471.5 599 54.1
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 5.2e-127 459.1 477 62.3
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 3.7e-125 453.0 545 58.0
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.0e-119 434.9 592 49.7
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 1.8e-119 434.1 488 60.7
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 3.0e-119 433.3 514 58.0
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 1.7e-117 427.6 506 59.7
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.1e-116 424.9 473 61.9
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 2.7e-115 420.2 473 61.5
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 4.5e-115 419.5 497 57.7
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.3e-114 417.9 473 60.7
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 5.0e-114 416.0 470 61.1
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 3.2e-113 413.3 470 61.3
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 1.6e-112 411.0 614 51.5
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 1.0e-111 408.3 498 57.0
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 1.4e-111 407.9 531 55.9
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 7.5e-110 402.1 446 61.4
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 6.3e-109 399.1 457 60.4
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 9.1e-108 395.2 449 59.7
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.2e-107 394.8 449 59.9
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 5.9e-107 392.5 534 54.5
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.0e-106 391.7 524 55.0
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 2.3e-106 390.6 459 59.3
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 1.1e-105 388.3 448 60.7
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 4.7e-104 382.9 537 53.4
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 1.4e-103 381.3 453 59.8
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 1.4e-103 381.3 477 57.9
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 4.0e-103 379.8 445 58.9
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 4.0e-103 379.8 459 59.0
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 6.8e-103 379.0 450 58.9
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 2.0e-102 377.5 450 59.3
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 2.0e-102 377.5 442 59.5
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 2.6e-102 377.1 489 55.2
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 5.7e-102 375.9 466 57.1
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 9.8e-102 375.2 453 57.4
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 2.2e-101 374.0 485 55.7
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 2.8e-101 373.6 421 61.3
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 2.8e-101 373.6 443 58.0
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 4.9e-101 372.9 449 58.4
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.8e-100 370.9 412 63.3
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 2.4e-100 370.5 464 57.5
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 5.4e-100 369.4 501 54.9
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.9e-98 363.6 436 58.5
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 6.6e-98 362.5 378 65.9
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 8.6e-98 362.1 497 53.7
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 1.5e-97 361.3 449 56.6
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 4.3e-97 359.8 453 56.1
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 4.7e-96 356.3 472 55.5
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 8.0e-96 355.5 432 60.4
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 6.8e-95 352.4 446 57.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.3e-93 348.2 466 56.0
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 9.2e-92 342.0 405 61.7
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 1.0e-90 338.6 633 46.6
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 3.0e-90 337.0 446 55.4
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 2.1e-88 330.9 500 51.0
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 8.0e-88 328.9 440 56.6
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 4.0e-87 326.6 475 52.2
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 3.4e-86 323.6 511 53.2
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 9.8e-86 322.0 445 52.6
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 6.4e-85 319.3 500 50.4
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 8.3e-85 318.9 458 51.3
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 3.2e-84 317.0 450 54.2
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 4.6e-83 313.2 562 47.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 6.6e-82 309.3 428 55.6
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.9e-81 307.8 456 53.1
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 2.1e-80 304.3 466 52.6
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 2.3e-79 300.8 395 42.8
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 2.3e-79 300.8 395 42.8
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.3e-79 300.8 441 39.9
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 3.1e-79 300.4 417 56.6
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 2.6e-78 297.4 447 51.2
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 2.9e-77 293.9 447 51.0
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 9.2e-76 288.9 494 47.8
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 1.9e-73 281.2 447 47.9
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 6.2e-72 276.2 393 53.7
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 1.4e-63 248.4 463 49.2
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 4.6e-59 233.4 445 45.6
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 4.6e-59 233.4 445 45.6
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 7.8e-59 232.6 388 51.8
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 2.4e-52 211.1 235 47.2
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 1.2e-51 208.8 200 51.0
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 4.3e-49 200.3 360 35.3
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 4.3e-49 200.3 360 35.3
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 1.5e-46 191.8 193 51.3
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.2e-43 182.2 315 35.2
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 2.1e-35 154.8 210 44.8
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 1.2e-11 75.9 147 36.7
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.8e-10 72.0 111 36.0
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.8e-10 72.0 111 36.0
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 3.0e-10 71.2 147 27.9
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 8.8e-10 69.7 188 27.7
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 6.3e-08 63.5 145 24.8
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.4e-07 62.4 149 27.5
ATR0743G184 Amborella trichopoda HOM05D007128 ORTHO05D009059 1.8e-07 62.0 141 28.4
Atru.chr10.1354 Acer truncatum HOM05D007093 ORTHO05D008910 2.4e-07 61.6 42 61.9
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 3.1e-07 61.2 167 26.9
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 3.1e-07 61.2 167 26.9
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 3.1e-07 61.2 158 25.3
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 3.1e-07 61.2 145 28.3
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 4.1e-07 60.8 166 25.9
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 4.1e-07 60.8 166 25.9
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 4.1e-07 60.8 167 26.3
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 5.3e-07 60.5 145 24.8
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 7.0e-07 60.1 138 28.3
Eucgr.J03058 Eucalyptus grandis HOM05D000891 ORTHO05D000761 7.0e-07 60.1 169 24.9
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 9.1e-07 59.7 138 27.5
BraA02t05256Z Brassica rapa HOM05D000424 ORTHO05D000355 9.1e-07 59.7 167 25.7
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 9.1e-07 59.7 150 27.3
MBI11_g15907_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 9.1e-07 59.7 123 29.3
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 9.1e-07 59.7 138 27.5
Atru.chr13.2266 Acer truncatum HOM05D000001 ORTHO05D000003 1.2e-06 59.3 111 30.6
Ciclev10025033m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.6e-06 58.9 179 27.4
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.6e-06 58.9 141 25.5
THA.LOC104808230 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 2.0e-06 58.5 136 27.9
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 2.6e-06 58.2 138 26.8
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 2.6e-06 58.2 149 23.5
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 4.5e-06 57.4 134 26.1
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 4.5e-06 57.4 134 26.1
MBI19_g16225_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010467 4.5e-06 57.4 172 25.0
PGSC0003DMG400008024 Solanum tuberosum HOM05D007145 ORTHO05D008952 4.5e-06 57.4 181 26.5
Lj1C655T0 Lonicera japonica HOM05D000001 ORTHO05D000003 5.9e-06 57.0 141 27.0
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 7.7e-06 56.6 135 30.4
Nn1g09722 Nelumbo nucifera HOM05D000001 ORTHO05D010435 7.7e-06 56.6 209 24.4


User provided reference genes

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