Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 4.1e-259 897.5 448 100.0
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 1.7e-252 875.5 448 97.3
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 8.1e-247 856.7 451 95.3
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 2.5e-232 808.5 451 90.7
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.0e-217 760.0 455 84.4
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 6.7e-217 757.3 452 85.2
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 2.5e-216 755.4 453 83.4
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 5.7e-216 754.2 457 82.9
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 7.4e-216 753.8 454 84.1
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 7.4e-216 753.8 454 84.4
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 1.3e-215 753.1 457 82.7
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 3.7e-215 751.5 452 83.6
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 1.4e-214 749.6 454 83.7
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 3.1e-214 748.4 454 84.1
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 5.3e-214 747.7 457 81.8
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 9.1e-214 746.9 459 81.0
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 2.6e-213 745.3 455 83.7
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.6e-213 745.3 454 83.3
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 3.4e-213 745.0 447 83.7
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 5.9e-213 744.2 457 81.6
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.0e-212 743.4 473 80.1
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.3e-212 743.0 454 82.8
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.7e-212 742.7 455 83.1
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 2.2e-212 742.3 455 82.6
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.9e-212 741.9 462 82.7
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 5.0e-212 741.1 451 83.4
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.9e-211 739.2 457 82.7
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 1.9e-211 739.2 453 82.6
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 2.5e-211 738.8 457 82.5
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 3.2e-211 738.4 455 82.2
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 5.5e-211 737.6 454 82.4
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 7.2e-211 737.3 457 80.3
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 7.2e-211 737.3 473 79.1
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 7.2e-211 737.3 473 79.7
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.7e-210 735.3 451 81.8
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 3.6e-210 734.9 456 82.0
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 4.7e-210 734.6 455 81.3
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 1.8e-209 732.6 453 81.9
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 2.3e-209 732.3 452 80.3
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 6.7e-209 730.7 452 80.1
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 1.1e-208 729.9 452 82.1
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.1e-208 729.9 457 80.3
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 2.0e-208 729.2 457 80.3
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 3.3e-208 728.4 472 79.0
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 5.7e-208 727.6 453 81.2
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 6.3e-207 724.2 456 79.2
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 1.4e-206 723.0 451 80.7
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 2.4e-206 722.2 461 80.0
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 5.3e-206 721.1 452 79.4
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 7.0e-206 720.7 453 79.7
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.2e-205 719.9 413 86.2
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.0e-205 719.2 452 79.4
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 2.0e-205 719.2 446 81.4
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 2.0e-205 719.2 457 79.9
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 2.6e-205 718.8 461 79.8
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 3.4e-205 718.4 446 81.4
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 4.5e-205 718.0 450 80.9
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 5.9e-205 717.6 451 81.2
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 7.7e-205 717.2 413 86.0
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.7e-204 716.1 450 80.7
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 5.0e-204 714.5 451 79.6
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 6.5e-204 714.1 451 78.7
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 8.5e-204 713.8 452 79.0
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 1.1e-203 713.4 454 80.4
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 1.4e-203 713.0 459 77.8
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 5.5e-203 711.1 412 84.2
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 7.2e-203 710.7 454 78.4
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.6e-202 709.5 447 79.2
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 2.1e-202 709.1 458 78.8
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 6.1e-202 707.6 446 79.8
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 3.9e-201 704.9 518 73.0
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 8.8e-201 703.7 452 79.0
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 8.8e-201 703.7 452 77.7
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 2.6e-200 702.2 414 83.8
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 9.7e-200 700.3 457 77.9
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 1.1e-198 696.8 448 77.2
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.8e-198 696.0 453 77.3
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 3.2e-195 685.3 417 80.8
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 1.4e-193 679.9 362 91.4
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.2e-192 676.8 397 84.6
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 3.7e-191 671.8 462 75.5
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.5e-189 665.2 357 91.3
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 7.7e-189 664.1 455 75.6
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.3e-188 663.3 454 76.4
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 6.5e-188 661.0 446 76.2
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 8.5e-188 660.6 454 76.2
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 3.4e-184 648.7 370 84.9
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 4.1e-182 641.7 454 75.3
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 9.1e-182 640.6 464 72.4
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 4.2e-179 631.7 395 78.0
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 7.5e-176 620.9 332 91.3
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.2e-168 597.0 332 87.0
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.3e-167 593.6 405 72.1
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 3.7e-167 592.0 381 73.2
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 1.2e-162 577.0 419 67.5
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 4.1e-158 562.0 351 80.6
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.1e-155 553.9 458 65.9
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 2.5e-155 552.7 358 77.9
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.3e-155 552.0 384 76.0
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 7.3e-155 551.2 380 69.2
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 2.1e-154 549.7 298 90.6
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 7.6e-144 514.6 279 89.2
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 1.1e-137 494.2 405 62.0
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 4.0e-137 492.3 324 75.9
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 8.7e-132 474.6 403 64.8
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 1.5e-131 473.8 313 79.2
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.4e-129 467.2 318 74.8
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.8e-127 459.1 253 88.1
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.8e-127 459.1 253 88.1
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 4.9e-127 458.8 332 72.6
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 8.7e-124 448.0 404 61.4
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.5e-112 410.6 409 50.1
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 1.0e-95 354.8 243 76.5
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 6.1e-77 292.4 320 47.2
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 3.8e-63 246.5 337 42.7
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 5.4e-57 226.1 403 35.7
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 6.1e-53 212.6 380 36.1
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 5.2e-52 209.5 341 36.1
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.4e-49 200.7 117 84.6
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 9.2e-49 198.7 349 35.0
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 5.0e-47 193.0 147 68.7
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 1.1e-44 185.3 102 84.3
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.5e-43 181.4 100 88.0
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 8.3e-42 175.6 363 31.1
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.7e-39 167.9 150 60.7
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 5.1e-39 166.4 96 87.5
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 8.1e-21 105.9 51 88.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 1.1e-14 85.5 45 97.8
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 2.8e-13 80.9 101 49.5
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 7.1e-09 66.2 38 86.8
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.6e-08 65.1 42 78.6
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 1.8e-07 61.6 150 28.0


User provided reference genes

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