Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 2.7e-291 1004.6 498 100.0
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 6.0e-275 950.3 498 94.6
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 3.3e-265 917.9 525 88.4
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 8.2e-248 860.1 500 85.8
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 4.2e-244 847.8 499 84.4
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 5.5e-228 794.3 458 82.8
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 5.1e-226 787.7 496 79.0
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.1e-223 780.0 496 76.0
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 7.0e-223 777.3 496 75.6
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.7e-221 772.7 457 80.3
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.2e-220 768.5 501 75.4
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 7.2e-220 767.3 470 78.9
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.6e-219 766.1 493 75.1
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 2.7e-219 765.4 495 76.0
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.6e-219 765.0 472 78.4
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.0e-218 763.5 494 75.7
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.1e-217 760.0 500 74.2
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.6e-217 758.8 481 77.8
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.4e-215 753.1 497 76.3
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.2e-214 750.0 501 74.7
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 4.5e-214 748.0 485 75.1
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.3e-213 746.5 470 78.7
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.7e-213 746.1 497 73.4
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 2.2e-213 745.7 486 74.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 2.2e-213 745.7 457 78.1
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 2.2e-213 745.7 498 74.1
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 5.0e-213 744.6 493 73.8
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 6.5e-213 744.2 499 75.4
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 8.5e-213 743.8 492 75.6
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.9e-212 742.7 429 81.8
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 3.2e-212 741.9 496 74.2
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 4.2e-212 741.5 425 82.1
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 5.5e-212 741.1 493 74.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 7.2e-212 740.7 464 76.3
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 9.4e-212 740.3 428 81.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.6e-211 739.6 498 73.7
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 2.7e-211 738.8 488 74.0
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 2.7e-211 738.8 427 81.0
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 3.6e-211 738.4 456 76.8
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 8.0e-211 737.3 424 81.8
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.8e-210 736.1 478 74.5
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.8e-210 736.1 500 71.4
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 1.8e-210 736.1 427 80.1
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 3.0e-210 735.3 499 72.7
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 4.0e-210 734.9 494 72.1
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 8.8e-210 733.8 498 73.1
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 8.8e-210 733.8 424 81.6
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.4e-209 731.9 447 78.3
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.4e-209 731.9 498 73.3
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 5.7e-209 731.1 424 81.6
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 5.7e-209 731.1 492 72.4
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.3e-208 729.9 456 76.1
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.2e-208 729.2 447 77.0
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 2.2e-208 729.2 423 80.9
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 8.3e-208 727.2 493 72.6
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 2.4e-207 725.7 469 77.0
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.1e-207 724.9 426 80.5
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 3.5e-206 721.8 500 71.0
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.5e-206 721.8 426 80.5
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 4.5e-206 721.5 496 70.4
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.7e-205 719.5 451 74.9
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.7e-205 719.5 497 69.8
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.7e-205 719.5 500 73.0
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 5.0e-205 718.0 464 73.9
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 6.5e-205 717.6 470 73.2
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.1e-204 716.8 497 69.6
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.1e-204 716.8 497 69.6
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.1e-204 716.8 422 78.9
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.9e-204 716.1 496 70.8
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.5e-204 715.7 471 74.7
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 4.2e-204 714.9 496 71.0
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 7.2e-204 714.1 496 70.6
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.2e-203 713.4 478 70.9
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.6e-203 713.0 499 70.5
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.7e-203 712.2 500 69.8
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.0e-202 710.3 443 77.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.4e-202 709.9 473 71.7
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.4e-202 709.9 473 71.7
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 4.0e-202 708.4 462 74.5
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 4.0e-202 708.4 435 77.2
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.0e-201 706.1 496 68.3
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.3e-200 703.4 420 78.6
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 2.2e-200 702.6 460 74.8
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 5.4e-199 698.0 435 76.6
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.5e-198 695.3 402 81.1
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.9e-197 692.2 431 76.1
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 2.5e-196 689.1 401 80.3
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 9.8e-193 677.2 403 79.2
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.4e-191 673.3 483 68.9
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.2e-190 670.2 502 67.3
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 7.8e-190 667.5 470 67.9
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 6.6e-189 664.5 376 83.8
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.6e-187 658.7 473 71.2
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 2.4e-183 646.0 422 72.7
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.0e-182 642.9 376 79.3
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 6.6e-181 637.9 496 67.3
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.9e-176 622.5 409 71.9
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 7.1e-175 617.8 446 66.4
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.9e-172 609.8 489 63.0
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 2.5e-172 609.4 420 70.7
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.3e-172 609.0 479 62.4
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.2e-171 607.1 392 74.7
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.9e-168 595.9 339 82.3
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.4e-167 593.6 376 75.3
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.6e-166 590.1 389 73.8
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 3.1e-162 575.9 474 61.4
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.2e-161 573.9 404 69.1
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.2e-161 573.9 503 56.9
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 1.1e-154 550.8 380 71.3
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 2.7e-150 536.2 440 59.8
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.4e-146 523.9 326 77.9
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 9.0e-146 521.2 455 56.3
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.7e-126 456.4 255 83.1
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.7e-120 437.2 295 70.8
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.7e-120 437.2 295 70.8
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 9.7e-116 421.4 390 53.6
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 7.2e-111 405.2 298 65.4
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 3.6e-110 402.9 348 60.1
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.2e-107 393.7 290 68.3
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.4e-106 391.0 283 66.8
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.0e-105 387.1 314 63.7
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.7e-104 384.0 264 70.8
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 2.0e-89 334.0 386 46.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.2e-85 319.3 206 71.8
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 5.6e-79 299.3 229 67.2
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 6.1e-78 295.8 335 45.4
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.5e-71 274.6 250 57.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 4.0e-69 266.5 566 33.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.3e-51 208.4 464 33.4
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 1.2e-46 191.8 110 80.9
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 6.0e-41 172.9 113 74.3
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.3e-40 171.0 112 71.4
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 3.3e-31 140.6 91 75.8
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.6e-31 139.8 82 75.6
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 6.2e-22 109.8 68 75.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.2e-20 105.5 69 71.0
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.2e-20 105.5 69 71.0
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 3.4e-20 104.0 69 71.0
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 4.5e-20 103.6 68 72.1
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 4.5e-20 103.6 69 71.0
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 4.5e-20 103.6 58 72.4
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.7e-19 101.7 70 68.6
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 2.2e-19 101.3 69 71.0
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.9e-19 100.9 69 68.1
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 2.9e-19 100.9 67 71.6
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 3.8e-19 100.5 68 69.1
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 4.9e-19 100.1 69 68.1
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 4.6e-17 93.6 53 77.4
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.8e-14 83.6 69 63.8
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 5.0e-11 73.6 69 58.0
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 5.0e-11 73.6 87 47.1
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 2.3e-08 64.7 45 68.9
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 9.7e-07 59.3 65 52.3


User provided reference genes

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